Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq37 183 6e-41 >seq37 Length=1179958 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| ||||| |||| ||| || ||||| ||||| ||||||||||||||| Sbjct 895686 TTCCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGC 895745 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | |||||||| | ||||| |||||||| ||||| | ||||||||||| | Sbjct 895746 TCAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAG 895805 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||| ||||||| ||| ||| || || | ||| | || | Sbjct 895806 GAATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGA 895865 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | |||||||||||||| || ||||| || ||||| |||||||| Sbjct 895866 CTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 159 bits (176), Expect = 6e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| || | || || || || || ||||| || || || ||| || || | ||| Sbjct 895928 CGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCA 895987 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || |||||||||||||| || | | || || ||||| || |||||||| ||| Sbjct 895988 TCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTG 896047 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || |||||||||| ||| ||| || |||| ||| || ||| ||||||| |||||| Sbjct 896048 TCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATG 896107 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||||||| ||||| |||||||| ||||||||| Sbjct 896108 GTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 154 bits (170), Expect = 3e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||||||| || ||||| || ||||| ||||| || ||| || || | Sbjct 895240 AGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGG 895299 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | || || |||||||| || || || || || || ||||| || || || Sbjct 895300 CCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCT 895359 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 || ||||||||||||| || ||| |||||||| ||| ||| | ||| ||||||| ||| Sbjct 895360 TTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTC-GCTGGGTTCCACTTCCAGGGT 895418 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || | ||||||||||| || ||||| Sbjct 895419 AATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 150 bits (166), Expect = 3e-31 Identities = 176/235 (75%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| | ||| ||||| || ||||| || | || || || ||||| ||||| ||||| || Sbjct 894996 TTACTGTCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTA 895055 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 |||| | || | |||||||| |||||||| || ||||| || || || || || || Sbjct 895056 ATCGCTCAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATC 895115 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 ||||| || || |||||||||||||| || | || || |||||||| ||| ||| | Sbjct 895116 TGGTGGGATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTC-GCTGG 895174 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| ||||||| || ||||| || || || | |||||||||||| || ||||| Sbjct 895175 GTTCCACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || |||||||| |||||||| || ||| | || | || ||||| || ||| Sbjct 896168 TGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGC 896227 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | || ||||||||||| || || ||||| ||||| ||||||||| Sbjct 896228 TTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCCTGAATCTTT 896287 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | ||| || |||||| |||| || ||| || || | |||||||||||||| || Sbjct 896288 GTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTA 896347 Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465 || ||||| ||||| |||||||| ||| Sbjct 896348 AGCGTCTTCACGAAGATCTGCATGATG 896374 Score = 141 bits (156), Expect = 2e-28 Identities = 164/220 (75%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||| | |||||||| || ||||| || ||||| ||||| || ||| || || | Sbjct 895468 AGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGG 895527 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | || || |||||||| || || || || || || ||||| || ||||| Sbjct 895528 CCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCT 895587 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| ||||| | || || |||||||| ||| || ||| ||||| | ||| Sbjct 895588 TTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTG 895647 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGAC-GAATATCTGCATT 68462 ||||||||||| || ||||| || || || ||||||||| Sbjct 895648 ATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921594509402120