Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq37 150 2e-31 >seq37 Length=1179958 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || | || | || |||||||| || ||||| |||||| Sbjct 895685 ATTCCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCG 895744 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || || |||||| ||||| || || ||| ||||||||||||||||||| ||| Sbjct 895745 CTCAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGA 895804 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| || | | ||||| | ||| | | ||| Sbjct 895805 GGAATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCG 895864 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||||| || ||||| |||||||| |||||||||||| Sbjct 895865 ACTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||||| | |||||||| ||| | || ||||| |||||||| ||||| ||| Sbjct 895913 ATGCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCG 895972 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 |||| || || |||||| | ||| || || ||| | || | ||||| || || || Sbjct 895973 CTCAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGC 896032 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||||||||| ||||||| || | | ||||| || |||| | | ||| Sbjct 896033 GGGATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCA 896092 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || ||||| ||||| || ||||||||||| Sbjct 896093 ACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 116 bits (128), Expect = 3e-21 Identities = 153/211 (73%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| |||||||||||||| ||||||| || || |||||| Sbjct 895476 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895535 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||| || ||| | || || | ||| || || || || || ||||||||||| Sbjct 895536 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTG 895595 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| ||| | | || | || |||| | | ||| || || | || | ||||| Sbjct 895596 GATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTT 895655 Query 114353 GCCGGTCAGAGTTTTTAC-AAAAATCTGCAT 114382 |||||||| ||||| || |||||||||||| Sbjct 895656 TCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| |||||||||||||| ||||||| || || |||||| Sbjct 895248 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895307 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 |||||||| || ||| | || || | ||| || || || || || || ||||| || Sbjct 895308 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTG 895367 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||||| ||| | | || | || |||| ||| ||| || |||| ||| | ||||| Sbjct 895368 AATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTT 895427 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || || || || || ||||| Sbjct 895428 TCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 |||| ||| | || || ||||| || |||||||| ||||||| ||||| ||||| Sbjct 896162 ACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCC 896221 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | ||| || |||||| | || | ||||||||||| ||||| || ||||||||||| | Sbjct 896222 AATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCCTGA 896281 Query 114294 ATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| ||||| ||| | | || | ||||| | | ||| || || | || | ||||| Sbjct 896282 ATC-TTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTT 896340 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || || || || || || ||||||||| Sbjct 896341 TCCTGTAAGCGTCTTCACGAAGATCTGCATG 896371 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || || || || | ||| || | ||| | ||||| || ||||||||||||||||||||| Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| |||||| | || || || ||| | || || | ||| || || || || Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTT-AGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||| ||| ||||| | | || | || |||| ||| ||| || Sbjct 895123 ATTCCCTCCTTGTCTTGAAT-TTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCAC 895181 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || |||| || || || || || ||||| Sbjct 895182 TTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420122003540652