Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq37 105 7e-18 seq151 102 9e-17 seq323 100 3e-16 seq83 95.1 1e-14 seq915 91.5 2e-13 seq292 89.7 6e-13 >seq37 Length=1179958 Score = 105 bits (116), Expect = 7e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | ||| | || |||||||||||| |||||||| || || || | Sbjct 895014 ACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCC 895073 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || | |||||| || ||||| || || | |||||| || | ||| | | |||||| Sbjct 895074 ATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTT 895133 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| |||| | ||| | || | | | |||||| | |||||| || | ||| | Sbjct 895134 GT-CTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAA 895192 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || | ||||| || ||||||||||| Sbjct 895193 TGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || | ||||||||| || | ||| | ||| ||||||||||||||||| || | Sbjct 895916 CCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTC 895975 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || | ||||| || ||||| || | |||||||| |||| || Sbjct 895976 AGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGG 896035 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || |||||| ||| | ||||| || | | | | | |||||| | ||| || Sbjct 896036 ATGCCTTCTTTGTCC-TGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAAC 896094 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| ||||| || || || || || || |||||| Sbjct 896095 TTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| ||||| | || | ||| | || ||| || || || ||||| || | Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || |||| || | ||||| |||||||| || | |||||| ||||||| || Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| | ||||| | | | | | | | ||||||| | ||| || Sbjct 896264 ATACCTTCTTTGTCC-TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAAC 896322 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || |||||||| || ||||| ||||| Sbjct 896323 CTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | ||||| || | ||| ||||||||||| ||||| || Sbjct 895230 ACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCT 895289 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || || || || || ||||| || || | |||||| || | ||| Sbjct 895290 CAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGG 895349 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTCGCTCGATTCCA 42159 | | ||| || | | ||| | ||||||| || || | | | |||||| | ||||| Sbjct 895350 GATTCCCTCTTTAT-CTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCA 895408 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | || |||||||| || || | ||||| || ||||||||||| Sbjct 895409 CTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 >seq151 Length=696129 Score = 102 bits (112), Expect = 9e-17 Identities = 74/85 (87%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 56998 AAAAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 |||||| || |||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 241036 AAAAATGTTGGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 241095 Query 57055 TACTCACCACTATACTACCGAGGAT 57079 ||||||||||||||||||||||||| Sbjct 241096 TACTCACCACTATACTACCGAGGAT 241120 >seq323 Length=434814 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 289694 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 289635 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 289634 ATACTACCGAGGA 289622 >seq83 Length=889590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| | ||||||||||| Sbjct 223978 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACTA 223919 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 223918 TACTACCGAGGA 223907 >seq915 Length=125912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 56/60 (93%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 57019 AAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 83284 AAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTACCGAGGA 83343 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 84643 TCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 84702 Query 57066 ATACTACCGAGGA 57078 ||||||||||||| Sbjct 84703 ATACTACCGAGGA 84715 >seq292 Length=469541 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 347042 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 347101 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 347102 TACTACCGAGGA 347113 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 348914 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 348973 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 348974 TACTACCGAGGA 348985 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 350786 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 350845 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 350846 TACTACCGAGGA 350857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196361022640