Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq37 125 7e-24 >seq37 Length=1179958 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| || |||| || |||||||| || ||||| ||||| | ||| || | ||||| Sbjct 895705 CACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATCTTC 895764 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 || ||||| ||||| | ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct 895765 GAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTG 895824 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCAC-CGGCGTCCACTTCTACAGTTACGGTCT 64412 || ||| ||| || || | | |||| |||| || ||||| | || | ||| | Sbjct 895825 GATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGC-TCGACTTCAAGCGTGATGGTTT 895883 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || |||| |||||||||||||| ||||| Sbjct 895884 TTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | | ||| ||||||| || || || ||||||||||||||||| Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | |||||| || || |||| |||| |||||| || || || Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || ||||| ||||| || ||| ||| | | || | || |||||| Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACT 895182 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || ||||| || || ||||| |||||||| Sbjct 895183 TCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || | ||| | ||| |||||||||| ||||| ||||| || |||||||| || Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || ||||||| | |||||||| || |||| | ||||| ||||||||||| Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || |||||||| || || || ||| ||| ||| ||| | | || | | || || Sbjct 896264 ATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACC 896323 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||| || || || | || || ||||| || ||||| Sbjct 896324 TCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||||||||| || | ||| || | ||||| || || Sbjct 895255 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGT 895314 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| |||| |||||| || || || ||||| ||||| ||||| || ||| Sbjct 895315 TTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTGAATCTTT 895374 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || || ||| | | || | || |||||||| | || | ||| || || ||| Sbjct 895375 GTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTTTCCAGTC 895434 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| |||||||| Sbjct 895435 AATGTCTTGACGAAGATTTGCAT 895457 Score = 100 bits (110), Expect = 3e-16 Identities = 146/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||||||||| || | ||| || | ||||| || || Sbjct 895483 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGT 895542 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| |||| |||||| || || || ||||||||||| ||||| || || Sbjct 895543 TTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGGATCTTC 895602 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || ||| ||| | | || | | || ||||| | ||| | ||| || |||||| Sbjct 895603 GTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTTCCGGTC 895662 Query 64421 AAAGTTTTTAC-GAAAATTTGCATT 64444 | ||||| || ||||| |||||| Sbjct 895663 AGGGTTTTCACAAAAAATCTGCATT 895687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629679499240