Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq410 96.9 3e-15 seq201 87.8 1e-12 >seq410 Length=362936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCCACACAA 108524 ||||| | ||||| | || |||||||||||||| || || ||| |||||||| ||||| Sbjct 156839 TGGGTACGGGATCATCGCGTCCACCACAAGTACTCGGAAACAGAC-GCCGACCCGCACAA 156897 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGA 108584 ||| || || ||||||| || ||||||| |||||||| ||||||| || |||| || Sbjct 156898 CGCAAAGAGAGGGTTCTTCTTTGCGCACGTTGGATGGCTGATGATGAAAAAACACCCGGA 156957 Query 108585 CGTGATC 108591 || ||| Sbjct 156958 TGTAATC 156964 >seq201 Length=570308 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 118161 ATACACTCCGACAGTTTTCCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCC 118220 ||||| || | ||| || ||||| || |||||||| ||| || ||||| || ||| Sbjct 492939 ATACATTCAGCTGGTTCACCATCGCGTCCTGCCCTTCCACACTCCTGGTAATACCCCTCC 492998 Query 118221 AGTGATTTGGGCATACTGTGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATC 118280 | |||||||||||| |||||| ||||| ||| |||| |||||| || ||||| Sbjct 492999 AATGATTTGGGCATTGAGTGATGAATCACATACCTCACGGTACCTTTATCAATTCCCATG 493058 Query 118281 CCGAACGCTATCGTCGAACATATCAC 118306 ||||| || || || | ||||| ||| Sbjct 493059 CCGAAGGCAATGGTAGCACATACCAC 493084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381761535435624