Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq37 131 1e-25 >seq37 Length=1179958 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||| | | |||| ||||||||| || ||||| || |||||||| ||||| Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | ||||||| ||||| ||||||||| | || || |||||||||||| || Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| ||||| ||| || | || ||| | || ||| | ||||| ||| || Sbjct 896264 ATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACC 896323 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || |||||||| ||||| || || || || || || ||||| Sbjct 896324 TCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || ||||| || ||||| |||||||| || ||| | ||||| | ||| Sbjct 895712 TGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATCTTCGAGTTGC 895771 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||||||||||||| ||||| ||||| ||||| || || Sbjct 895772 TTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGGATCTTT 895831 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || || |||| |||| || || || || || | || |||||||| |||||| Sbjct 895832 GTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATGGTTTTTCCTGTC 895891 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| ||||| ||||| Sbjct 895892 AGGGTTTTTACGAAAATCTGCAT 895914 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || | |||||| ||||| || ||||| |||||||||||||| Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| || || || || ||| | || | | ||| || || ||| Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| |||||||| ||||||| |||| ||| | || || | ||||| ||| || Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACT 895182 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||| || || |||| || || || || ||||||||| Sbjct 895183 TCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCATA 895230 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 895231 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895290 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | ||||| | |||||| || ||| | |||| | ||| || || ||| Sbjct 895291 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGG 895350 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| || || || ||| || |||| || | || || | ||||| ||| || Sbjct 895351 ATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACT 895410 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | |||||||||||| || |||| || || || || ||||||||| Sbjct 895411 TCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCATA 895458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357381454813985