Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq37 127 2e-24 >seq37 Length=1179958 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| |||||||| || || ||||||||||| ||||| || ||||| | ||| ||| Sbjct 895930 CAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATC 895989 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||||||| || || ||| | ||||| || ||||| || ||||| ||||||||||| || Sbjct 895990 TTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTC 896049 Query 45248 TTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGT 45307 ||||| ||| || | ||| | || |||| | || ||||| ||||| | || Sbjct 896050 CTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGT 896109 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || ||||| || ||||| ||||| Sbjct 896110 TTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 118 bits (130), Expect = 1e-21 Identities = 169/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | |||||| || || || || ||||| || ||||| ||||||||| Sbjct 895685 ATTCCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCG 895744 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | |||| ||| || | ||| ||||| ||| | || | || || ||||| || Sbjct 895745 CTCAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGA 895804 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| |||||||| ||||| || ||| || | ||| | | ||| | |||| Sbjct 895805 GGAATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCG 895864 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || || | ||||| || || || |||||||| ||||| ||||| ||| || Sbjct 895865 ACTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATGCCGCCAC 895922 Score = 100 bits (110), Expect = 3e-16 Identities = 150/207 (72%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || || ||||| | |||| ||| || | |||| Sbjct 895483 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGT 895542 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| | ||||| || || || || |||||||| ||||| | | || Sbjct 895543 TTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGGA-TCTT 895601 Query 45258 TGTTTGATCGC-TTCT--ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 |||| || | |||| | || |||| | || ||||||||||| | ||||| ||| Sbjct 895602 CGTTT--TCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTTCCG 895659 Query 45315 GTTAGAGTTTTTAC-AAAAATTTGCAT 45340 || || ||||| || |||||| ||||| Sbjct 895660 GTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 ||| ||||| || | |||||| ||||| || || || |||||||| || || |||||||| Sbjct 895002 TCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCT 895061 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | ||| ||| ||||| || ||||||||| | || | | ||||| || || || Sbjct 895062 CAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGG 895121 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGC-TTCT--ACGGTGTCGGAAGACTC 45289 || || || || ||||||| |||| |||| || | |||| | || |||| | || Sbjct 895122 GATTCCCTCCTTGTCTTGAA-TTTTGGTTT--TCACATTCTCGATGGAGTCGCTGGGTTC 895178 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| || || || || | || || || || |||||||| Sbjct 895179 CACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||||||||| || || || ||||| | |||| ||| || | |||| Sbjct 895255 TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGT 895314 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | |||| | ||||| || || || || || ||||||||||||| | || Sbjct 895315 TTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTGAA-TCTT 895373 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 ||||| || | || | || |||| | || ||||| || |||| ||||| || || Sbjct 895374 TGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTTTCCAGT 895433 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || |||||||| Sbjct 895434 CAATGTCTTGACGAAGATTTGCAT 895457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451989521253160