Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq37 123 6e-23 >seq37 Length=1179958 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || ||||| || || || || || |||| ||| || || || || Sbjct 895694 CGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTT 895753 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || |||||||||||||||||||||||||| ||||| ||| ||| ||| Sbjct 895754 CGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCT 895813 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || || |||||| ||||||| ||| | | ||| | | || || || | | Sbjct 895814 TCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGC 895873 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || ||||| || ||||| || Sbjct 895874 GTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTG 895911 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || ||||| |||||||| | |||||||| || || | ||||||||| Sbjct 895934 ACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCC 895993 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||| |||||||| || | |||||||| || || || |||||| |||||| Sbjct 895994 AATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGA 896053 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||||||| ||| | || ||| ||| ||| || |||| ||||| || || Sbjct 896054 ATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTT 896113 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || ||||| || Sbjct 896114 CCCGTCAGGGTTTTGACGAAAATCTG 896139 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||| | ||||||||| || || | |||||| Sbjct 895474 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895533 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||| || || | |||||| || || ||||||||| || Sbjct 895534 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCT 895593 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||| |||| || ||| ||| ||| || || | ||||| || Sbjct 895594 TGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTT 895653 Query 199598 TTACCCGTGAGAGTTTTCACAAAAA 199622 || || || || ||||||||||||| Sbjct 895654 TTTCCGGTCAGGGTTTTCACAAAAA 895678 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || |||||||| || |||| ||||||||| ||| || | || ||| Sbjct 896159 AGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCT 896218 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||| || ||||| || | ||||| ||||| ||| || |||||| ||| Sbjct 896219 TCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCC 896278 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| ||| || |||| |||| ||| ||| || || | ||||| || Sbjct 896279 TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTT 896338 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 896339 TTTCCTGTAAGCGTCTTCACGAAGATCTG 896367 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 ||||| || ||||| ||||||||||| | |||||| || ||| || | ||||||||| Sbjct 895021 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCCATCTTCC 895080 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | ||||||||| ||||| || || | |||||| || || ||||| || || ||| Sbjct 895081 AACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 895140 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 || || ||||| |||| || ||| | | ||| || |||| ||| || ||||| Sbjct 895141 ATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAATGGTCTTC 895200 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | || || || || ||||| Sbjct 895201 CCAGTCAAGGTCTTGACGAAGATTTG 895226 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || |||||||| | ||||||||| || || | |||||| Sbjct 895246 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895305 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || ||||||||||| || || | |||||| || || ||||| ||| || Sbjct 895306 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCT 895365 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||||||| |||||| |||| || ||| | | ||| || |||| || || || Sbjct 895366 TGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTT 895425 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || ||||| Sbjct 895426 TTTCCAGTCAATGTCTTGACGAAGATTTG 895454 Score = 95.1 bits (104), Expect = 3e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 ||||| ||||| |||||||||||||||||||| | || ||| |||||||||| | || Sbjct 895103 CTTATTTTCGCAGGAAAGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAACATTCAA 895044 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || |||||||||||||| ||||| ||| | || || Sbjct 895043 AAGGAGTCTACTCTTCATCTTGTGTTGCGTCTGCG 895009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178885030957207