Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq37 140 4e-28 >seq37 Length=1179958 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | ||||||||| || ||||| | ||| |||||||| |||||||||||| Sbjct 895914 TGCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGC 895973 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || | ||||| |||||||| ||||| |||||||| |||| || Sbjct 895974 TCAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCG 896033 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || || |||||| ||||| |||| | | | | | |||||| | ||| | Sbjct 896034 GGATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAA 896093 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| ||||||||||| |||||||| ||||| || || || |||||| Sbjct 896094 CTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| | || ||||| | || ||| || ||||| ||||||||| Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | |||||||| ||||| || || ||||| ||||||| || Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || |||||| ||||| |||| | || | | ||||||| | ||| || Sbjct 896264 ATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACC 896323 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||||||||| || || ||||| || || ||||| ||||| Sbjct 896324 TCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| ||||| | ||| ||||||||| || ||||| ||| | || || | Sbjct 895014 ACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCC 895073 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | |||||| || ||||| || | | |||||| || | || | | |||||| Sbjct 895074 ATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTT 895133 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| || || | || | || | | | |||||| | |||||| |||| ||| || Sbjct 895134 GTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAAT 895193 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||| || || || ||||||||||| Sbjct 895194 GGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||||||| || || || | || ||||| || || |||||||| Sbjct 895495 TCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAA 895554 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||| || | || | | || ||||| ||||||| | || | || Sbjct 895555 ATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTC 895614 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC- 46581 | | | |||||| | ||| || || | ||||||||||| || ||||| ||||| || Sbjct 895615 TCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACA 895674 Query 46582 AAAGATTTGCATT 46594 ||| || |||||| Sbjct 895675 AAAAATCTGCATT 895687 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||||||||| || | || || || ||||| || || ||| || || || | Sbjct 895699 ACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCC 895758 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || ||||| ||||| |||||||| || | ||||| ||||||| || | | || || Sbjct 895759 ATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTT 895818 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| |||||| |||| | | | | | ||| |||| || || || | |||||| Sbjct 895819 GTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGAT 895878 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || ||||| ||||| || || || ||||| Sbjct 895879 GGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || ||||||||| || || || | || ||||| || || |||||||| Sbjct 895267 TCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAA 895326 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||| || | || | | ||| || || ||||| | || | || Sbjct 895327 ATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTC 895386 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | | |||||| | |||||| |||| || |||||||| || |||| || || || Sbjct 895387 TCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACG 895446 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 895447 AAGATTTGCAT 895457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565221294472920