Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq37 131 2e-25 >seq37 Length=1179958 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || ||||||||||| | || || || | | | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||||| | | | |||| ||| || | |||||||| || || || |||||||| Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAAGATTCAGGACAAAGAAGGTATCCCTCCCGACCAA 896251 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | |||| ||| ||||| || |||| |||| || ||| | | |||||||||| Sbjct 896250 CAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAAC 896191 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || |||| || ||| | || || ||||||||||| || Sbjct 896190 ATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGG 896144 Score = 127 bits (140), Expect = 2e-24 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||||||||| || || || ||||||||||| | || |||||| | | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||| | | ||||| | |||| ||| |||| |||||||| || ||||| |||||| Sbjct 895854 GACTCTATTGAAAACG--TGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACC 895797 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | ||| || || || || || || | || ||||| | ||| || | Sbjct 895796 AACAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATA 895737 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || ||| | || || || ||||| ||||| Sbjct 895736 ACATCCAGAAAGAATCCACCCTTCACCTGGTGTTGCGT 895699 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || || |||||||| ||| | || || || ||| | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | |||| | ||| ||| || | || ||||||||||| || | || || Sbjct 895397 GACTCCATCGAGAACG-TGAAAACAAAGATTCAAGATAAAGAGGGAATCCCACCAGATCA 895339 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| |||| ||| || ||||| || || || | || ||||| | ||||||||| Sbjct 895338 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895279 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| ||||||||| | || || || ||||| || || ||||||| || Sbjct 895278 CATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895231 Score = 123 bits (136), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| || ||||| ||||||||||| | || || || | | Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 38303 CGACAGC-GTGCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | || ||||| | |||| ||| || | |||||||| || || || |||| Sbjct 896083 CGACTCCATTGAAAACG--TGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGAT 896026 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||||| | |||| ||| || || || |||| || | || || || | ||||||| Sbjct 896025 CAGCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTAC 895966 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||||||| |||| || ||| | || ||||||| | |||||| Sbjct 895965 AATATTCAAAAGGAATCGACACTTCATCTAGTTTTGCGTTTACGTGGCGGC 895915 Score = 116 bits (128), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTC-GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 |||||| || || || ||||| || || || ||||||||||| |||| || || | | Sbjct 895687 AATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAA 895628 Query 38302 CCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | | | ||| || |||| |||||||| ||||| || | || | Sbjct 895627 GCGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATC 895568 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| |||| ||| || ||||| || || || | || ||||| | |||||||| Sbjct 895567 AGCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACA 895508 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| ||||||||| | || || || ||||| || || ||||||| || Sbjct 895507 ACATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157663520640