Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq293 87.8 2e-12 seq283 84.2 3e-11 >seq293 Length=468840 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 168430 TTACCACGGAGTGGAAATACCCCATAATGATCTCTACCCACGACGGAGAGACCAGCGACA 168489 || ||||| |||||||| || ||||||||||| | || || || | ||| |||| Sbjct 431227 TTGCCACGAAGTGGAAACACTCCATAATGATCCTTGCCAACCACACTCAAGCCACTGACA 431286 Query 168490 GCGAGAGTTTTCGCTGAATCACCCTCTGTCACGATGAGTGTACACTTTCCAGACTGTGCC 168549 || | || || |||||||| |||||||||| |||||| ||||||| | || | ||| Sbjct 431287 GCCAAGGTCTTGGCTGAATCTCCCTCTGTCAGGATGAGAGTACACTGACTTGAGT-TGCG 431345 Query 168550 G-TACCAGCTTTGTTCGCATCGTCCAATTTGGGGATACCA 168588 | ||||| | || ||||| || | |||||| |||||| Sbjct 431346 GCCCCCAGCATCATTGGCATCATCAAGTTTGGGAATACCA 431385 >seq283 Length=477172 Score = 84.2 bits (92), Expect = 3e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 109726 AATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCA 109785 || || |||| |||| || | | |||||||||| | ||||| ||||| || ||||| Sbjct 150744 AACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAAGGACTCA 150803 Query 109786 TTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTT 109845 || || || || || ||||||||||| ||||| ||||| || || | | ||||||||| Sbjct 150804 TTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAGACTGTTT 150863 Query 109846 C 109846 | Sbjct 150864 C 150864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588958176113800