Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq37 170 4e-37 >seq37 Length=1179958 Score = 170 bits (188), Expect = 4e-37 Identities = 168/216 (78%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || |||||||| ||||| ||||| || || || |||||| || |||| ||||| Sbjct 895702 CAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATC 895761 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 |||||| ||||| || |||||||| || || |||||||| |||||||| ||||||||||| Sbjct 895762 TTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTC 895821 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAAC 195104 ||| || ||| ||| ||||| ||||| | ||| ||| || |||||||| || | Sbjct 895822 TTGGATCTTTGTCTTCACGTTTTCAATAGAGTC---ACTCGGCTCGACTTCAAGCGTGAT 895878 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||||| ||||||||||| | ||||| Sbjct 895879 GGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 154 bits (170), Expect = 3e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 ||| ||||| |||||||| ||||| |||||||| ||||||||| |||| || | |||| Sbjct 895017 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAG-GTACGGCCAT 895075 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | |||||| |||||||| ||||| | || || ||||| || || || || |||| Sbjct 895076 CTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGT 895135 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||||||||| || || ||||| |||| ||| ||||||||| || |||| | Sbjct 895136 CTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAATGG 895195 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || ||||| || || ||||| | |||||| Sbjct 895196 TCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||||||||| || |||||||| ||||| ||| || |||| |||||||| Sbjct 895248 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895307 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || ||||| || || | || || ||||| || || || ||||| ||||| Sbjct 895308 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTG 895367 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| || |||||||| |||| ||| ||||||||| ||||||| || || Sbjct 895368 AATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTT 895427 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || ||||| | |||||| Sbjct 895428 TCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| || ||||| || || || |||||||||||||| ||| || |||| ||||| Sbjct 895930 CAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATC 895989 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||| || | || || || || || || |||||||||||||| Sbjct 895990 TTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTC 896049 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| ||| ||| ||||| ||||||| ||| ||| ||||| || || | || Sbjct 896050 CTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGT 896109 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| |||| ||||| ||||| | |||||| Sbjct 896110 TTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 118 bits (130), Expect = 2e-21 Identities = 154/212 (73%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||||||||| || |||||||| ||||| ||| || |||| |||||||| Sbjct 895476 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895535 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || ||||| || || | || || || || || || |||||||||||||| Sbjct 895536 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTG 895595 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || || || ||||| |||| ||| ||| ||||| || || | || || Sbjct 895596 GATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTT 895655 Query 195111 TCCTGTCAAAGTTTTTACGAACACT-TGCATT 195141 ||| |||| ||||| || || | | |||||| Sbjct 895656 TCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || |||||||| || || ||||| ||| |||| || | || ||||| Sbjct 896162 ACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAG-GTACGGCCGTCTTC 896220 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || ||||| || | ||| |||||||| ||||| || ||||||||||| || Sbjct 896221 CAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCCTG 896280 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||| || ||||| || |||| ||| || ||||| || | || || Sbjct 896281 AATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTT 896340 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| | || || ||||| | ||||| Sbjct 896341 TCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109447184920907