Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq37 105 4e-18 >seq37 Length=1179958 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| ||| || |||||||| ||||| ||| |||| |||| || Sbjct 895248 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895307 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || || || | ||||| ||| | || | ||||| || || Sbjct 895308 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTG 895367 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| ||| ||| | || || || | || || || || | ||| |||||||| Sbjct 895368 AATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTT 895427 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||| || | ||||| || ||||| |||||| Sbjct 895428 TCCAGTCAATGTCTTGACGAAGATTTGCATA 895458 Score = 100 bits (110), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 5/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| ||| || |||||||| ||||| ||| |||| |||| || Sbjct 895476 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895535 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || ||||||||||| || || || | ||||| || | || | || || ||||| Sbjct 895536 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTG 895595 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| ||| || || || || || || | | ||||| |||| || |||||| Sbjct 895596 GATCTTCGTTTTCAC--ATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTT 895653 Query 34950 TTTCCCGTGAGAGTCTTCAC-AAAGATCTGCAT 34981 ||||| || || || ||||| ||| |||||||| Sbjct 895654 TTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||||| ||| ||||||||| |||||||| || ||| |||| |||| Sbjct 895702 CAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATC 895761 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || || |||||||| || || || || || ||||| | || | || || ||||| Sbjct 895762 TTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTC 895821 Query 34889 GCTAATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||| || ||| | | || || |||| | ||| || || | || |||| Sbjct 895822 TTGGATCTT-TGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATGG 895880 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||||| || || || || || || |||||||| Sbjct 895881 TTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 |||||| | |||| ||| ||| || ||||| || ||||| || |||| |||| Sbjct 895930 CAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATC 895989 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || || ||||| || || | || ||||| || |||| | || || ||||| Sbjct 895990 TTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTC 896049 Query 34889 GCTAATCTTCTGT-TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| ||| || ||| | | || || || | | ||||| || | || |||| Sbjct 896050 CTGAATCTT-TGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGG 896108 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 |||||||||| || || || || || |||||||| Sbjct 896109 TTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624021381288