Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq283 127 2e-24 >seq283 Length=477172 Score = 127 bits (140), Expect = 2e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 ||| |||||||| || || || ||||||||| ||| | | || ||||| || |||| Sbjct 155890 GGTTTCATAAATACCATCAATGCTATCATCTGACATGGTCAGAAGGAAACAGCTTGACAA 155949 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 |||||| | || ||||| |||||||| | || || || |||||| | ||||||||||| Sbjct 155950 TTGCGGTTTGCACGTTCCAGAATTAAACAGAGTAGGCGAAGCATGAGTGAACCATTTCTC 156009 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 ||| | || ||||| || ||||| | | | || || ||||| || || | || Sbjct 156010 TGACATCAGGTTATAAGTCTCAATGGCCGCTTTGATGTCATGATGATGAATTCCCACTGA 156069 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCA 48759 |||||||| ||||| | ||| |||| |||| ||| ||| ||| || |||| Sbjct 156070 GACACGCATCAACATGTGTTGGGGTCGTTCAGCAACTTTCCCATTGATCTTCA 156122 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || || || ||||| ||||| | | ||| || || |||||||| || ||||| | || Sbjct 150741 TGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAAGGAC 150800 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 ||||||||||||| ||| || ||||| |||||||| ||||| | |||||| || | || Sbjct 150801 TCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAGACTG 150860 Query 47448 TTTCTTACTCCATAT 47462 ||||||| ||||||| Sbjct 150861 TTTCTTAATCCATAT 150875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562091789182440