Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq37 98.7 2e-15 >seq37 Length=1179958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | ||| | || || ||| || || || Sbjct 895228 ATACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCG 895287 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | ||| | || || | |||||| || || ||||| | ||||| || || ||| Sbjct 895288 CTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGT 895347 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACAT--TAGTTATAGTATCTGACGATT 172017 || ||||| ||||||||||| || || |||| || | | | | ||| ||| | || Sbjct 895348 GGGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTG--GGTT 895405 Query 172018 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | ||||| || ||||||||||| ||||| ||||| || | ||| || ||||| Sbjct 895406 CCACTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 91.5 bits (100), Expect = 3e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | ||| | || || ||| || || || Sbjct 895456 ATACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCG 895515 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | ||| | || || | |||||| || || ||||| | ||||| || |||||| Sbjct 895516 CTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGT 895575 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || |||| ||||| || | || | ||| Sbjct 895576 GGGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCA 895635 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT-AATGAATATCTGCATT 172070 ||||| ||||| |||||||| || || | ||||| | || ||||||||| Sbjct 895636 ACTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905108608321800