Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq539 114 2e-19 seq338 114 2e-19 seq125 111 2e-18 seq265 105 8e-17 seq21 96.9 4e-14 seq1129 93.3 5e-13 >seq539 Length=271727 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| ||| | ||| | | |||||||||||||||||| | || ||| || Sbjct 102697 GCCAGTTCACCGGGCAGAAGCAGCCTGATGGCGGTCTGGATCTCGCGTGAGCTGATGGTT 102756 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| |||| ||| | ||| | ||||||| || | |||||| Sbjct 102757 GACTTCTTGTTGTAGTGAGCCAAGCGGGAAGATTCGCTAGCGATGCGCTCAAAGATGTCG 102816 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||||||| || ||| ||||| || Sbjct 102817 TTGACGAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCTGGGTGAACT 102876 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||||||| Sbjct 102877 TGCTTCAACACTTTGTAGATG 102897 >seq338 Length=421853 Score = 114 bits (126), Expect = 2e-19 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| ||| | ||| | | |||||||||||||||||| | || ||| || Sbjct 33123 GCCAGTTCACCGGGCAGAAGCAGCCTGATGGCGGTCTGGATCTCGCGTGAGCTGATGGTT 33182 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| |||| ||| | ||| | ||||||| || | |||||| Sbjct 33183 GACTTCTTGTTGTAGTGAGCCAAGCGGGAAGATTCGCTAGCGATGCGCTCAAAGATGTCG 33242 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||| ||||||||||||| ||| | ||| ||||||| || ||| ||||| || Sbjct 33243 TTGACGAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCTGGGTGAACT 33302 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| | ||| ||||||||| Sbjct 33303 TGCTTCAACACTTTGTAGATG 33323 >seq125 Length=759631 Score = 111 bits (122), Expect = 2e-18 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | | ||| | | |||||||||||||||||| | || ||| || Sbjct 515121 GCCAGTTCACCGGGGAGAAGCAGTCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGGTT 515180 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| ||||| || || ||| ||||||| |||| |||||| Sbjct 515181 GATTTCTTGTTGTAGTGAGCCAGGCGCGAAGCTTCGCCAGCGATGCGCTCGAAAATGTCG 515240 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||| | ||| ||||||| || ||| ||||| || Sbjct 515241 TTCACGAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACT 515300 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| || || ||||||||| Sbjct 515301 TGCTTCAGAACTTTGTAGATG 515321 >seq265 Length=489835 Score = 105 bits (116), Expect = 8e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | | ||| | | |||||||||||||||||| | || ||| || Sbjct 313909 GCCAGTTCACCGGGGAGAAGCAGCCTTATGGCGGTCTGGATCTCGCGGGAGCTGATGGTT 313850 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| ||||| || || || ||||||| |||| |||||| Sbjct 313849 GATTTCTTGTTGTAGTGAGCCAGGCGCGAAGCTTCTCCAGCGATGCGCTCGAAAATGTCG 313790 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 || || ||||||||||||| ||| | ||| ||||||| || ||| ||||| || Sbjct 313789 TTCACGAACGAGTTCATGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACT 313730 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 ||||| || || ||||||||| Sbjct 313729 TGCTTCAGAACTTTGTAGATG 313709 >seq21 Length=1312773 Score = 96.9 bits (106), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | | || | | |||||||||||||||||| | || ||| || Sbjct 1275509 GCCAGTTCACCGGGGAGAAGAAGCCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGGTT 1275450 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| || | || || ||| ||||||| || | |||||| Sbjct 1275449 GACTTCTTGTTGTAGTGAGCTAAGCGCGAAGCTTCGCCTGCGATGCGCTCAAAGATGTCG 1275390 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| |||||||||| ||||| ||| ||||||| || ||| ||||| || Sbjct 1275389 TTGACAAAGGAGTTCATGATACCCATCGCTTTGCTGGAGATTCCAGTGTCAGGGTGAACT 1275330 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || || | ||| ||||||||| Sbjct 1275329 TGTTTCAACACTTTGTAGATG 1275309 >seq1129 Length=76097 Score = 93.3 bits (102), Expect = 5e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||||||| ||| | | | || | | ||| |||||||||||||| | || ||| || Sbjct 52476 GCCAGTTCACCGGGGAGAAGAAGCCTGATGGCCGTCTGGATCTCGCGGGAGCTGATGGTT 52417 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 |||||| |||| || | || || ||| ||||||| || | |||||| Sbjct 52416 GACTTCTTGTTGTAGTGAGCTAAGCGCGAAGCTTCGCCTGCGATGCGCTCAAAGATGTCG 52357 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 |||||||| |||||||||| ||||| ||| ||||||| || ||| ||||| || Sbjct 52356 TTGACAAAGGAGTTCATGATACCCATCGCTTTGCTGGAGATTCCAGTGTCAGGGTGAACT 52297 Query 1254528 TGCTTGAGCACCTTGTAGATG 1254548 || || | ||| ||||||||| Sbjct 52296 TGTTTCAACACTTTGTAGATG 52276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106940521402457