Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq37 140 3e-28 >seq37 Length=1179958 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || ||||| || ||||| ||||| || | | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || ||||||||||||||||||||| || |||||||| ||| Sbjct 895854 GACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCAA 895795 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||| ||||| || || || || ||| ||| | || ||||||||| Sbjct 895794 CAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAAC 895735 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || || ||||| || || ||| |||||||||| Sbjct 895734 ATCCAGAAAGAATCCACCCTTCACCTGGTGTTGCG 895700 Score = 136 bits (150), Expect = 4e-27 Identities = 157/210 (75%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATT-AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||| ||| | ||||| || ||||| ||||| || || |||||||| ||| | | Sbjct 895686 ATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAAG 895627 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | | || | || ||| ||||||||||||||||||||||| || || ||||| Sbjct 895626 CGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATCA 895567 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || ||||| ||||| || || ||| ||| | || || || || Sbjct 895566 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895507 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||||||| || || |||||||| Sbjct 895506 CATTCAAAAGGAATCCACTCTTCACTTGGT 895477 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | ||||| || || || ||||| || || || ||||| ||| | | | Sbjct 896142 ATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAGC 896083 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || || |||||| || ||||||||||| || || |||||||| Sbjct 896082 GACTCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCAG 896023 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||| || |||||||| || |||| ||| ||| || || || || Sbjct 896022 CAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACAAT 895963 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||||||||||||||| || | || ||||| || || || ||| Sbjct 895962 ATTCAAAAGGAATCGACACTTCATCTAGTTTTGCGTTTACGTGGCGGC 895915 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || ||||| ||||| || ||||| ||| ||| | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || |||| |||||||| ||| ||||| ||||| ||||| || || ||||| Sbjct 895397 GACTCCATCGAGAACGTGAAAACAAA-GATTCAAGATAAAGAGGGAATCCCACCAGATCA 895339 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||| || ||||| ||||| || || ||| ||| | || || || || Sbjct 895338 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895279 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||||||||||||| || || |||||||| Sbjct 895278 CATTCAAAAGGAATCCACTCTTCACTTGGT 895249 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || | || || || || |||||||| ||||| ||| ||| | Sbjct 895229 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACCATTACGCTGGAAGTGGAACCCAGC 895170 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| | | || | || ||||| ||| || |||||||| || ||||| || || ||||| Sbjct 895169 GACTCCATCGAGAATGTGAAAACCAAA-ATTCAAGACAAGGAGGGAATCCCACCAGATCA 895111 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | || || || || || ||| |||| ||| | | | || ||||| || Sbjct 895110 GCAGAGGCTTATTTTCGCAGGAAAGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAA 895051 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| || || || || | |||||||| ||||||| || Sbjct 895050 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGCGTCTGCGCGGTGG 895003 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || ||||| || || || || || ||| | | | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||| | || || | ||| ||||| ||| || ||||||||||| || |||||||| || Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAA-GATTCAGGACAAAGAAGGTATCCCTCCCGACCA 896252 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| || || || || || || || || |||| || | | | || || || || Sbjct 896251 ACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAA 896192 Query 24883 CATTCAAAAGGAATCGACACTACA 24906 ||| || || || ||||| || || Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCA 896168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449883984973880