Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq539 141 1e-27 seq338 141 1e-27 seq125 141 1e-27 seq265 138 2e-26 seq21 120 5e-21 seq1129 114 2e-19 >seq539 Length=271727 Score = 141 bits (156), Expect = 1e-27 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| ||||| | |||||||| ||| ||| Sbjct 102653 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACTGCGTGTTTCGCCAGTTCACCGGGCA 102712 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||| | || ||| || |||||| | Sbjct 102713 GAAGCAGCCTGATGGCGGTCTGGATCTCGCGTGAGCTGATGGTTGACTTCTTGTTGTAGT 102772 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| | ||| | ||||||| || | ||||||||||| |||||||||| Sbjct 102773 GAGCCAAGCGGGAAGATTCGCTAGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTCA 102832 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| | ||| |||| Sbjct 102833 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCTGGGTGAACTTGCTTCAACACTTTGT 102892 Query 1485710 A 1485710 | Sbjct 102893 A 102893 >seq338 Length=421853 Score = 141 bits (156), Expect = 1e-27 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| || || ||| ||||| | |||||||| ||| ||| Sbjct 33079 TGTACTTGGTGACAGCTTTGGTTCCTTCACTGACTGCGTGTTTCGCCAGTTCACCGGGCA 33138 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||| | || ||| || |||||| | Sbjct 33139 GAAGCAGCCTGATGGCGGTCTGGATCTCGCGTGAGCTGATGGTTGACTTCTTGTTGTAGT 33198 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| |||| | ||| | ||||||| || | ||||||||||| |||||||||| Sbjct 33199 GAGCCAAGCGGGAAGATTCGCTAGCGATGCGCTCAAAGATGTCGTTGACGAACGAGTTCA 33258 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| | ||| |||| Sbjct 33259 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCTGGGTGAACTTGCTTCAACACTTTGT 33318 Query 1485710 A 1485710 | Sbjct 33319 A 33319 >seq125 Length=759631 Score = 141 bits (156), Expect = 1e-27 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || || ||||| || || ||||||||| | |||||||| ||| | | Sbjct 515077 TGTACTTGGTCACAGCTTTGGTTCCTTCACTGACGGCGTGTTTCGCCAGTTCACCGGGGA 515136 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||||| || ||| || |||||| | Sbjct 515137 GAAGCAGTCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGGTTGATTTCTTGTTGTAGT 515196 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| || ||| ||||||| |||| |||||||| || |||||||||| Sbjct 515197 GAGCCAGGCGCGAAGCTTCGCCAGCGATGCGCTCGAAAATGTCGTTCACGAACGAGTTCA 515256 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| || || |||| Sbjct 515257 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAGAACTTTGT 515316 Query 1485710 A 1485710 | Sbjct 515317 A 515317 >seq265 Length=489835 Score = 138 bits (152), Expect = 2e-26 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || || ||||| || || ||||||||| | |||||||| ||| | | Sbjct 313953 TGTACTTGGTCACAGCTTTGGTTCCTTCACTGACGGCGTGTTTCGCCAGTTCACCGGGGA 313894 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | | |||||||||||||||||||| || ||| || |||||| | Sbjct 313893 GAAGCAGCCTTATGGCGGTCTGGATCTCGCGGGAGCTGATGGTTGATTTCTTGTTGTAGT 313834 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| || || ||||||| |||| |||||||| || |||||||||| Sbjct 313833 GAGCCAGGCGCGAAGCTTCTCCAGCGATGCGCTCGAAAATGTCGTTCACGAACGAGTTCA 313774 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| ||||||| || ||| ||||| || ||||| || || |||| Sbjct 313773 TGATGCCCATGGCTTTGCTGGAGATACCAGTGTCAGGGTGAACTTGCTTCAGAACTTTGT 313714 Query 1485710 A 1485710 | Sbjct 313713 A 313713 >seq21 Length=1312773 Score = 120 bits (132), Expect = 5e-21 Identities = 171/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || || ||||| || || ||| ||||| | |||||||| ||| | | Sbjct 1275553 TGTATTTGGTCACAGCTTTGGTTCCTTCACTGACAGCGTGTTTCGCCAGTTCACCGGGGA 1275494 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | | |||||||||||||||||||| || ||| || |||||| | Sbjct 1275493 GAAGAAGCCTGATGGCGGTCTGGATCTCGCGGGAGCTGATGGTTGACTTCTTGTTGTAGT 1275434 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||| || ||| ||||||| || | |||||||||||||| ||||||| Sbjct 1275433 GAGCTAAGCGCGAAGCTTCGCCTGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 1275374 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| |||| ||||||| || ||| ||||| || || || | ||| |||| Sbjct 1275373 TGATACCCATCGCTTTGCTGGAGATTCCAGTGTCAGGGTGAACTTGTTTCAACACTTTGT 1275314 Query 1485710 A 1485710 | Sbjct 1275313 A 1275313 >seq1129 Length=76097 Score = 114 bits (126), Expect = 2e-19 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || || ||||| || || ||| ||||| | |||||||| ||| | | Sbjct 52520 TGTATTTGGTCACAGCTTTGGTTCCTTCACTGACAGCGTGTTTCGCCAGTTCACCGGGGA 52461 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | | ||| |||||||||||||||| || ||| || |||||| | Sbjct 52460 GAAGAAGCCTGATGGCCGTCTGGATCTCGCGGGAGCTGATGGTTGACTTCTTGTTGTAGT 52401 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || | ||| || ||| ||||||| || | |||||||||||||| ||||||| Sbjct 52400 GAGCTAAGCGCGAAGCTTCGCCTGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCA 52341 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||||| |||| ||||||| || ||| ||||| || || || | ||| |||| Sbjct 52340 TGATACCCATCGCTTTGCTGGAGATTCCAGTGTCAGGGTGAACTTGTTTCAACACTTTGT 52281 Query 1485710 A 1485710 | Sbjct 52280 A 52280 Score = 86.0 bits (94), Expect = 1e-10 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1485549 CTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTC 1485608 |||||||||||||| || ||| || |||||| | | || | ||| || || Sbjct 51707 CTGGATCTCGCGGGAGCTGATGGTTGACTTCTTGTTGTAGTGAGCTAAGCGCGAAGCTTC 51648 Query 1485609 GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTT 1485668 | ||||||| || | |||||||||||||| ||||||||||| ||||| |||| | Sbjct 51647 GCCAGCGATGCGCTCAAAGATGTCGTTGACAAAGGAGTTCATGATACCCATCGCTTTGCT 51588 Query 1485669 GGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1485710 |||||| || ||| ||||| || || || | ||| ||||| Sbjct 51587 GGAGATTCCAGTGTCAGGGTGAACTTGTTTCAACACTTTGTA 51546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915988867187819