Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq37 127 1e-24 >seq37 Length=1179958 Score = 127 bits (140), Expect = 1e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||||||||| |||| || ||||| |||||||| || ||| | || |||| || Sbjct 895706 ACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATCTTCG 895765 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 |||||||||||||||||||| || || || ||||| | || | || || ||||| | Sbjct 895766 AGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGG 895825 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || ||| || ||| | | || || ||| | | |||||| |||| || ||||| ||| Sbjct 895826 ATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATGGTTTTT 895885 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || ||||| ||||| || ||||||||| Sbjct 895886 CCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||| |||||||| ||||| ||| | || |||| Sbjct 895246 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895305 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||||||||| ||||| | ||||| ||| | || | ||||| || || Sbjct 895306 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCT 895365 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || ||| ||| ||| | || || || ||| || || || | ||| ||||| Sbjct 895366 TGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTT 895425 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| || ||||| ||||| Sbjct 895426 TTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || ||||| | ||||| || |||| ||| ||| ||||| ||||| ||||| Sbjct 896142 TTCCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGC 896201 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || | || |||| |||||| || ||||| || | ||| || ||||| | | Sbjct 896202 TCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAG 896261 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG- 34927 | | || || ||||| | || ||| || || || || |||| | | || | | Sbjct 896262 GGATACCTTCTTTGTCCTGAATCTTTGTCTTAAC--ATTCT--CGATACTGTCGCTTGGT 896317 Query 34928 ---ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || |||| || ||||| ||||| || || ||||| || |||||||||||||| Sbjct 896318 TCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATGAT 896373 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| |||||||| || || | | | || |||| |||| |||||||| ||||| Sbjct 895038 CTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAA 895097 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 || || | ||||| ||| | || | ||||||||||| || | |||| |||| | | Sbjct 895098 AATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTC-TTGAATTTTGGTTT-TCACA 895155 Query 34906 TGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | || || || || ||| || || || | || |||||||| || || | |||||| Sbjct 895156 TTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTG 895215 Query 34964 ACAAAGATCTGCAT 34977 || ||||| ||||| Sbjct 895216 ACGAAGATTTGCAT 895229 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 5/215 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| ||| ||||| |||||||| ||||| ||| | || |||| Sbjct 895474 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895533 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||||||||| ||||| | ||||| || | || | || || ||||| Sbjct 895534 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCT 895593 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || ||| || || || || || || | | || || || | || |||| Sbjct 895594 TGGATCTTCGTTTTCAC--ATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGG 895651 Query 34944 TCTTTCCCGTGAGGGTCTTTAC-AAAGATCTGCAT 34977 | ||||| || ||||| || || ||| |||||||| Sbjct 895652 TTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683190128599