Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq37 152 1e-31 seq519 89.7 1e-12 seq188 89.7 1e-12 >seq37 Length=1179958 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| || ||||| ||||| ||||| ||||| || || || || || || Sbjct 895229 TACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGC 895288 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| || ||||| ||||||||||| || || || || || || |||||||| | Sbjct 895289 TCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTG 895348 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || |||||||||||||||| ||| || || || || | || | ||||| | Sbjct 895349 GGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCA 895408 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || || || || || ||||| ||||| || || || ||||| Sbjct 895409 CTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 138 bits (152), Expect = 2e-27 Identities = 170/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||||| || ||||| ||||| ||||| ||||| || || || || || || Sbjct 895457 TACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGC 895516 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || ||| || ||||| ||||||||||| || || || || || || ||||| || | Sbjct 895517 TCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTG 895576 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| ||||| | ||| ||||| || || | || | ||||| | Sbjct 895577 GGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAA 895636 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTAC-AAATATCTGCATT 82811 |||| | ||| || || || || |||| || || || ||| ||||||||| Sbjct 895637 CTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 138 bits (152), Expect = 2e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || | ||| || || ||||||||||| || |||||||| || ||| || Sbjct 895699 ACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCC 895758 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| ||||| ||||| || ||||| || | ||||| || ||||| || ||||| || Sbjct 895759 ATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTT 895818 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| ||||||| || || |||||||| | ||| | || || ||||| | || || Sbjct 895819 GTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGAT 895878 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||||| || ||||| || |||||||| Sbjct 895879 GGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||||||| || |||| || || || || |||||||| || || || || Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| | ||| || ||||| || |||| || ||||| || ||||| Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || |||||||||| || ||||| || || | || | ||||| || Sbjct 896264 ATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACC 896323 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || | ||| || || || ||||| | |||||| || || |||||||| || Sbjct 896324 TCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATGAT 896373 >seq519 Length=283496 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 |||||| |||||||| |||| ||| | ||||||| | ||| ||||| || | || Sbjct 67547 AGGTTGCATGTGGTCAGTTTGTGGAATTCATGATCAGGGATGGGCTGAAAGGCCAGTGTT 67606 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 |||||||||| |||| |||||||| | |||| |||| ||| |||||||||| | ||| Sbjct 67607 TGGGAAGATACGATACATGAATTACAACGGTTGCAAGAGAAAGTTTGATGTTGGAGAATT 67666 Query 198635 TATACAAAAATA 198646 | || ||||| Sbjct 67667 TGTAAGGAAATA 67678 >seq188 Length=602745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 198515 AGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATATT 198574 |||||| |||||||| |||| ||| | ||||||| | ||| ||||| || | || Sbjct 134224 AGGTTGCATGTGGTCAGTTTGTGGAATTCATGATCAGGGATGGGCTGAAAGGCCAGTGTT 134283 Query 198575 TGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCATT 198634 |||||||||| |||| |||||||| | |||| |||| ||| |||||||||| | ||| Sbjct 134284 TGGGAAGATACGATACATGAATTACAACGGTTGCAAGAGAAAGTTTGATGTTGGAGAATT 134343 Query 198635 TATACAAAAATA 198646 | || ||||| Sbjct 134344 TGTAAGGAAATA 134355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981796744640719