Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq323 98.7 1e-15 seq151 95.1 2e-14 seq292 93.3 6e-14 seq83 93.3 6e-14 seq915 91.5 2e-13 >seq323 Length=434814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 289620 ATTCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 289679 Query 8716 TCCCCGACGAGGAG-CAGA 8733 |||||| || |||| |||| Sbjct 289680 TCCCCGCCGGGGAGACAGA 289698 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 289622 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 289681 Query 11789 CCCGACGAGGAG 11800 |||| || |||| Sbjct 289682 CCCGCCGGGGAG 289693 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 289693 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 289634 Query 139413 TACTAACGAGGA 139424 ||||| |||||| Sbjct 289633 TACTACCGAGGA 289622 >seq151 Length=696129 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 241119 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 241060 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 241059 CCCGCCGGGGAG 241048 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/73 (89%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 241119 TCCTCGGTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 241060 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 241059 CCCGCCGGGGAGG 241047 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 241048 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 241107 Query 139413 TACTAACGAGGATTTTGGTACACGCT-GAATGCATTTT 139449 ||||| ||||||| || |||| | ||||||| ||| Sbjct 241108 TACTACCGAGGAT----GTTCACGTTGGAATGCAATTT 241141 >seq292 Length=469541 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 347115 ATTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 347056 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 347055 TCCCCGCCGGGGAG 347042 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 348987 ATTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 348928 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 348927 TCCCCGCCGGGGAG 348914 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| || Sbjct 350859 ATTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAAT 350800 Query 8716 TCCCCGACGAGGAG 8729 |||||| || |||| Sbjct 350799 TCCCCGCCGGGGAG 350786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 347113 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 347054 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 347053 CCCGCCGGGGAGG 347041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 348985 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 348926 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 348925 CCCGCCGGGGAGG 348913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 350857 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 350798 Query 11789 CCCGACGAGGAGG 11801 |||| || ||||| Sbjct 350797 CCCGCCGGGGAGG 350785 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 347042 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 347101 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 347102 TACTACCGAGGAATT 347116 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 348914 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 348973 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 348974 TACTACCGAGGAATT 348988 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| || |||||| | |||||||||||||||| | |||| |||||||| | ||||||| Sbjct 350786 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 350845 Query 139413 TACTAACGAGGATTT 139427 ||||| |||||| || Sbjct 350846 TACTACCGAGGAATT 350860 >seq83 Length=889590 Score = 93.3 bits (102), Expect = 6e-14 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 ||||||| |||||||||||| ||| | |||| ||||| | |||||||||||||||||||| Sbjct 223906 GTCCTCGGTAGTATAGTGGTGAGTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 223965 Query 11788 CCCCGACGAGGAGGGAGGTTAACGC 11812 ||||| || ||||| ||| ||||| Sbjct 223966 CCCCGCCGGGGAGGTAGG--AACGC 223988 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||| | |||| ||||| | ||||||||||||||||||||| Sbjct 223907 TCCTCGGTAGTATAGTGGTGAGTGTCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 223966 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 223967 CCCGCCGGGGAG 223978 >seq915 Length=125912 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| ||| Sbjct 84716 TTCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATT 84657 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 84656 CCCCGCCGGGGAG 84644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/84 (85%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||| |||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 84715 TCCTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 84656 Query 11789 CCCGACGAG--GAGGGAGGTTAAC 11810 |||| || | ||| |||| |||| Sbjct 84655 CCCGCCGGGGAGAGTGAGGCTAAC 84632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652825043284240