Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq37 138 1e-27 >seq37 Length=1179958 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| |||||||| || || ||||||| || || | | | || ||||| ||||| | Sbjct 895717 GGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCA-TCTTCGAGTTGCTTTC 895775 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||| ||||||||||| || ||||| ||||| ||||||| || Sbjct 895776 CGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTCTTGGATCTTTGTCT 895835 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| | ||| | ||||| || || | |||| |||||| || ||||| | Sbjct 895836 TCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATGGTTTTTCCTGTCAGGG 895895 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||||||||||||||||||| Sbjct 895896 TTTTTACGAAAATCTGCATG 895915 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || |||||||| |||| || ||| | | | || || | ||||| || Sbjct 895946 GTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCA-TCTTCCAATTGCTTCCC 896004 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| |||| | ||||||||| ||||| ||||||||||| ||||| |||||| ||| Sbjct 896005 GGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATCTTTGTCTT 896064 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| | |||| | || || || || | |||| |||||| || ||||| || Sbjct 896065 CACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTCAGGGT 896124 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 896125 TTTGACGAAAATCTGCAT 896142 Score = 116 bits (128), Expect = 4e-21 Identities = 151/207 (73%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGAGC 133514 ||| | ||| ||||||||||| || ||||| |||| || || ||| ||| || | Sbjct 896167 ATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGT--ACGGCCGTCTTCCAAT 896224 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| ||| |||| | ||||| |||||||||||||| ||||| ||||| ||| Sbjct 896225 TGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCCTGAATC 896284 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| ||| | | ||| | ||||| | || || || || | |||| |||||| || Sbjct 896285 TTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCT 896344 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 896345 GTAAGCGTCTTCACGAAGATCTGCATG 896371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406170478040