Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq37 134 9e-27 >seq37 Length=1179958 Score = 134 bits (148), Expect = 9e-27 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||||||||| | || | ||| || || |||||| || ||| Sbjct 896132 AAAATCTGCATTCCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATG 896191 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| ||| | || || |||| |||||||| || || || ||||| || ||||| Sbjct 896192 TTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGT 896251 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||||||||| ||| || ||| | ||||| || | |||| Sbjct 896252 TGGTCGGGAGGGATACCTTCTTTGTCCTGAATCTT-TGTCTTAACATTCTCGATACTGTC 896310 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||||| ||| || |||| ||||| ||||| ||||| | ||| || || ||||||||||| Sbjct 896311 GCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 125 bits (138), Expect = 5e-24 Identities = 168/230 (73%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | ||||| || |||||| || ||||| |||||||| ||| Sbjct 895458 ACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCT 895517 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||||||||| ||||||| | ||||||||| | || Sbjct 895518 CAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGG 895577 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || ||| |||| |||| || | || |||||||| ||| | Sbjct 895578 GATTCCTTCTTTGTCTTGGATCTTC-GTTTTCACATTCTCGATGGAGTCGCTTGGTTCAA 895636 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC-AAAGATCTGCAT 33749 | || | ||||| ||||| || || | ||||| || ||| |||||||| Sbjct 895637 CTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | ||||| || |||||| || ||||| |||||||| ||| Sbjct 895230 ACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCT 895289 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || || | |||||||||||| ||||||| | |||||||||| | || Sbjct 895290 CAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGG 895349 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || ||||| || ||| || ||||| || | || | || |||||| | ||||| Sbjct 895350 GATTCCCTCTTTATCTTGAATCTT-TGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCA 895408 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || || || || ||||| |||||| Sbjct 895409 CTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCATA 895458 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| ||||| | ||| ||||| ||| ||||| |||||||||||| Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| || ||||| || ||||| | | |||||||||| | || Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| |||||| |||| |||| || | || |||||| | |||||| Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTT-GGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCAC 895181 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||| || || || || || || || || || ||||| |||||| Sbjct 895182 TTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCATA 895230 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33532 AAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGT 33591 ||||| || || | ||| || || || ||||| || ||||| ||| || || || Sbjct 895925 AAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGG 895984 Query 33592 TCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCT 33651 | || |||||||| || ||||| |||||||| ||||||||||| |||| | |||||| Sbjct 895985 CCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCT 896044 Query 33652 TTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGT 33710 ||||| ||| || ||| | || | || | || |||||||| ||| || || | || Sbjct 896045 TTGTCCTGAATCTT-TGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGT 896103 Query 33711 GATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| ||||| || || | ||||| || || |||||||| Sbjct 896104 GATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 98.7 bits (108), Expect = 7e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| ||||||| || || ||| ||||| || ||| Sbjct 895676 AAAATCTGCATTCCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATG 895735 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 || |||||| || || || | || || | ||| |||||||| || || | |||||| Sbjct 895736 TTATAATCGCTCAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGT 895795 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | |||||||||||| || || ||| | || | || | | ||| Sbjct 895796 TGGTCGGGAGGAATACCTTCTTTGTCTTGGATCTT-TGTCTTCACGTTTTCAATAGAGTC 895854 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || |||| |||||| ||||| ||||| | |||||||| || |||||||| Sbjct 895855 ACTCGGCTCGACTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328694301280320