Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq37 120 7e-22 >seq37 Length=1179958 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| | ||||| || |||| | | ||| Sbjct 895899 AAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGTGACTCTATTGAAAAC 895840 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||| ||| || ||| || | || |||||| Sbjct 895839 GTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCAACAGCGTCTCATCTTC 895780 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||| | |||||||| | || || |||||| ||| |||||||||| || Sbjct 895779 GCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAACATCCAGAAAGAATCC 895720 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||||| || ||| | ||||| Sbjct 895719 ACCCTTCACCTGGTGTTGCGTCTTCG 895694 Score = 105 bits (116), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA--ATCAGTAAAGC 206251 || || || || || || ||||||||||| ||| | |||| || | ||| | Sbjct 895205 ACTGGGAAGACCATTACGCTGGAAGTGGAACCCAGCGACTCCATCGAGAATGTGAAAACC 895146 Query 206252 AAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAA 206311 |||| ||||||| || || ||||| || || || || ||||| ||||| |||| Sbjct 895145 AAAA--TTCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTTATTTTCGCAGGAA 895088 Query 206312 AGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTC 206371 |||||||||||||||| | || ||| |||||||||| | || || ||||||||||||| Sbjct 895087 AGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAACATTCAAAAGGAGTCTACTCTTC 895028 Query 206372 ACCTTGTTTTGAGACTTCG 206390 | ||||| ||| | || || Sbjct 895027 ATCTTGTGTTGCGTCTGCG 895009 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| ||||||||||| |||||| | || || ||| |||| |||| Sbjct 896355 AAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGCGACAGTATCGAGAAT 896296 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||||||| || |||||||| || || ||| || || | || ||| Sbjct 896295 GTTAAGACAAAGATTCAGGACAAAGAAGGTATCCCTCCCGACCAACAGCGATTAATTTTC 896236 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| || | || ||| ||| |||||| ||||||||||||| Sbjct 896235 GCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAACATCCAGAAAGAGTCG 896176 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 896175 ACCCTTCATCTAGT 896162 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| || || |||||||| |||||| ||||||| ||| ||| Sbjct 896139 CAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAGCGAC 896080 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | ||| || ||| ||||||||| || |||||||| || ||| || || Sbjct 896079 TCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCAGCAG 896020 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || |||||||| ||||| ||||||||||| | || || ||| ||||| | Sbjct 896019 CGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACAATATT 895960 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 || || || || || ||||| || |||||| Sbjct 895959 CAAAAGGAATCGACACTTCATCTAGTTTTG 895930 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGC-AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||||| || || |||||||| |||||| | ||||| ||| || Sbjct 895683 CAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAAGCGA 895624 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | |||| || || ||||| ||||| ||||||||||| || || || Sbjct 895623 CTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATCAGCA 895564 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || || ||||||||||| || | |||||||| | || || ||| |||||| | Sbjct 895563 GAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAACAT 895504 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 || || || || ||||||||| | ||| Sbjct 895503 TCAAAAGGAATCCACTCTTCACTTGGTT 895476 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| | ||| || |||||||| || || |||||||||| ||||| || || || Sbjct 895694 CGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTT 895753 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||| || ||||||||||||||||| || || ||||| Sbjct 895754 CGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTG 895797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181784141026741