Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq37 138 1e-27 >seq37 Length=1179958 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| || | | | || ||||| || ||||| || ||||||| ||| || | Sbjct 895700 CGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCA 895759 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||| || || |||| |||| ||||||||||| || ||||| || |||||||| Sbjct 895760 TCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTG 895819 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || ||| |||| | ||| | || || ||||||| ||||| | ||| | Sbjct 895820 TCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATG 895879 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| ||||||| ||||||||||||| Sbjct 895880 GTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||| | |||||| || | | || || |||||||||||||||||||||| ||| || Sbjct 895239 CAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCG 895298 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||||||| ||||| |||| | || || | ||| |||||||| || || || || Sbjct 895299 GCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTC 895358 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 |||||| ||| ||| ||||| | || | | ||| | || |||||||| | || Sbjct 895359 TTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGT 895418 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | ||||| ||||||| || || | ||| || ||||| Sbjct 895419 AATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || |||||||| | ||| | | || || |||||||| ||||||||||||| || Sbjct 895921 ACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGT 895980 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| | || || |||| | || | ||||| ||||| || || ||||| Sbjct 895981 TCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCC 896040 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| ||| |||| | ||| | | ||| | || || ||||| | Sbjct 896041 TTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAG 896100 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || ||||| ||||| | |||||||||||| Sbjct 896101 AGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 105 bits (116), Expect = 6e-18 Identities = 156/220 (71%), Gaps = 1/220 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||| | |||||| || | | || || |||||||||||||||||||||| ||| || Sbjct 895467 CAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCG 895526 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||||||| ||||| |||| | || || | ||| ||||| || || || ||||| Sbjct 895527 GCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTC 895586 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || || ||||| | || | | ||| | || || ||||||| || Sbjct 895587 TTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGT 895646 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTA-TGAAAATCTGCAT 132123 | ||||| || ||||| ||||| | ||||||||||| Sbjct 895647 GATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| ||||| || | ||| | | ||||| |||||||||||||| ||||||| |||| Sbjct 895009 CGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTA 895068 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | ||| || || | | || || | ||| |||||||| || || || Sbjct 895069 CGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCC 895128 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || |||||| ||||| | || | | ||| | || |||||||| | | Sbjct 895129 TCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGC 895188 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || || ||||||| || || | ||| || ||||| Sbjct 895189 GTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| |||||| ||||| | || || || | Sbjct 896177 GACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCG 896236 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | |||| |||||||| || ||||| || |||||||| || | | | ||||| | ||| Sbjct 896237 AAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTC-CTGAATCTTTGTCTTAAC 896295 Query 132050 -TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 | || | | | ||| | || || || || | || | ||||| || || || || || Sbjct 896296 ATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTT 896355 Query 132109 TATGAAAATCTGCATGA 132125 | ||| |||||||||| Sbjct 896356 CACGAAGATCTGCATGA 896372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596776553560