Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq37 143 2e-29 >seq37 Length=1179958 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || ||||| || |||||| | || || | ||||| ||| ||| | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | |||||| | || ||| ||| ||| ||||||||||| || || || |||||| Sbjct 895397 GACTCCATCGAGAACGTGAAAACAAAGATTCAAGATAAAGAGGGAATCCCACCAGATCAG 895338 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || ||| |||||||||||||||| ||| | ||||| ||||| Sbjct 895337 CAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAAC 895278 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||| || || | | ||||||| || Sbjct 895277 ATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895231 Score = 129 bits (142), Expect = 5e-25 Identities = 166/228 (73%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 25175 ATGCA-AGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||| | | ||||| ||||| | ||||||||| | ||||| ||||||| ||| | | Sbjct 895686 ATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAAG 895627 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | |||||| | || ||| || || || ||||| || || || || ||||| Sbjct 895626 CGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATCA 895567 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || |||| || ||| |||||||||||||||| ||| | ||||| ||||| Sbjct 895566 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895507 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||| |||||||| |||| || || | | ||||||| || Sbjct 895506 CATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895459 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || |||||||| | || |||||| | |||||| | |||||||| | | Sbjct 895915 CATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAG 895856 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || |||| || | || || ||| || || ||||| ||||| || ||||| || Sbjct 895855 TGACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCA 895796 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || | ||||| | || ||| || ||||||||||||| ||| | |||||||| || Sbjct 895795 ACAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAA 895736 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || |||||||||||| |||| | ||||| Sbjct 895735 CATCCAGAAAGAATCCACCCTTCACCTGGTGTT 895703 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || |||||| | ||||| | ||||| ||| | | | Sbjct 896142 ATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAGC 896083 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | || || | || || ||| ||| || ||||| || || |||||||||||| Sbjct 896082 GACTCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCAG 896023 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || ||| || ||| | ||||||| ||| | ||||| |||||| Sbjct 896022 CAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACAAT 895963 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| ||||| || ||||| |||| || Sbjct 895962 ATTCAAAAGGAATCGACACTTCATCTAGTTTT 895931 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || || || || || | || ||| | ||||| ||| ||| | Sbjct 895229 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACCATTACGCTGGAAGTGGAACCCAGC 895170 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || | |||||| | || ||| |||||| || || ||||| || || || |||||| Sbjct 895169 GACTCCATCGAGAATGTGAAAACCAAAATTCAAGACAAGGAGGGAATCCCACCAGATCAG 895110 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || |||| || || || || | ||||||| | | | ||||||||||| Sbjct 895109 CAGAGGCTTATTTTCGCAGGAAAGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAAC 895050 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||||| || || || ||||| | ||||| Sbjct 895049 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 895018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445080930330720