Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq125 109 8e-18 seq539 104 3e-16 seq338 104 3e-16 seq265 104 3e-16 >seq125 Length=759631 Score = 109 bits (120), Expect = 8e-18 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || || ||||| || ||||| || | | ||| |||| ||| || Sbjct 515320 ATCTACAAAGTTCTGAAGCAAGTTCACCCTGACACTGGT-----ATC-TCCAGCAAAGCC 515267 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||||||| || |||||||| |||| ||||||| ||| || Sbjct 515266 ATGGGCATCATGAACTCGTTCGTGAACGACATTTTCGAGCGCATCGCTGGCGAAGCTTCG 515207 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||| || ||| || | |||||||||||||||||| | Sbjct 515206 CGCCTGGCTCACTACAACAAGAAATCAACCATCAGCTCCCGCGAGATCCAGACCGCCATC 515147 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| |||||||| | ||||||||| || || |||| Sbjct 515146 AGACTGCTTCTCCCCGGTGAACTGGCGAAACACGCCGTCAGTGAAGGAACCA 515095 >seq539 Length=271727 Score = 104 bits (114), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||| | ||||| || ||||| || | | ||| |||| ||| || Sbjct 102896 ATCTACAAAGTGTTGAAGCAAGTTCACCCAGACACTGGT-----ATC-TCCAGCAAAGCC 102843 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||||||| ||||||||||| | || ||||||| | ||| | Sbjct 102842 ATGGGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCTAGCGAATCTTCC 102783 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || ||||||| || ||| || | |||||||||||||||||| | Sbjct 102782 CGCTTGGCTCACTACAACAAGAAGTCAACCATCAGCTCACGCGAGATCCAGACCGCCATC 102723 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | ||| ||| |||||||| | ||||| ||| || || |||| Sbjct 102722 AGGCTGCTTCTGCCCGGTGAACTGGCGAAACACGCAGTCAGTGAAGGAACCA 102671 >seq338 Length=421853 Score = 104 bits (114), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| ||| | ||||| || ||||| || | | ||| |||| ||| || Sbjct 33322 ATCTACAAAGTGTTGAAGCAAGTTCACCCAGACACTGGT-----ATC-TCCAGCAAAGCC 33269 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||||||| ||||||||||| | || ||||||| | ||| | Sbjct 33268 ATGGGCATCATGAACTCGTTCGTCAACGACATCTTTGAGCGCATCGCTAGCGAATCTTCC 33209 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| | || ||||||| || ||| || | |||||||||||||||||| | Sbjct 33208 CGCTTGGCTCACTACAACAAGAAGTCAACCATCAGCTCACGCGAGATCCAGACCGCCATC 33149 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | ||| ||| |||||||| | ||||| ||| || || |||| Sbjct 33148 AGGCTGCTTCTGCCCGGTGAACTGGCGAAACACGCAGTCAGTGAAGGAACCA 33097 >seq265 Length=489835 Score = 104 bits (114), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||| || || ||||| || ||||| || | | ||| |||| ||| || Sbjct 313710 ATCTACAAAGTTCTGAAGCAAGTTCACCCTGACACTGGT-----ATC-TCCAGCAAAGCC 313763 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| |||||||||||||| || |||||||| |||| ||||||| || || Sbjct 313764 ATGGGCATCATGAACTCGTTCGTGAACGACATTTTCGAGCGCATCGCTGGAGAAGCTTCG 313823 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||| || ||| || | |||||||||||||||||| | Sbjct 313824 CGCCTGGCTCACTACAACAAGAAATCAACCATCAGCTCCCGCGAGATCCAGACCGCCATA 313883 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||| |||||||| | ||||||||| || || |||| Sbjct 313884 AGGCTGCTTCTCCCCGGTGAACTGGCGAAACACGCCGTCAGTGAAGGAACCA 313935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177577690100202