Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq37 125 6e-24 >seq37 Length=1179958 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || |||||||| | ||| || | ||| | || ||||||||||| ||||| ||| | Sbjct 895916 CCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTC 895975 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||| ||||| || || || |||||||||||||| || | || Sbjct 895976 AGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGG 896035 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || || |||||| |||||| ||||| || | | | |||||| | ||| || Sbjct 896036 ATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACT 896095 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| ||||| ||||| ||||||| ||||| || || |||||||||| Sbjct 896096 TCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATTC 896144 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || | | |||||| | ||| | ||| |||||||||||||||||||||| Sbjct 895002 TCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCT 895061 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 |||||| || | || |||| |||||| || || || || | || |||||| || | || Sbjct 895062 CAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGG 895121 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 | | |||||||| | ||| ||| | |||| | | | | | |||||| | ||||| Sbjct 895122 GATTCCCTCCTTGT-CTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCA 895180 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | |||| ||| || || || || ||||| || || || || || ||||| Sbjct 895181 CTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| ||| || |||||| | || || || || || || || || Sbjct 895495 TCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAA 895554 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | | || ||||| |||||| |||| | | Sbjct 895555 ATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTC 895614 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC- 35724 | | | |||||| | ||| || || | ||||| ||||| || |||| |||||||| Sbjct 895615 TCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACA 895674 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 895675 AAAAATCTGCATTC 895688 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| ||| || |||||| | || || || || || || || || Sbjct 895267 TCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAA 895326 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| || | || | | ||| || || |||||| |||| | Sbjct 895327 ATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTC 895386 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | | |||||| | |||||| |||| || || ||||| || ||||| || || || Sbjct 895387 TCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACG 895446 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 895447 AAGATTTGCAT 895457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450779957858680