Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq283 154 2e-32 >seq283 Length=477172 Score = 154 bits (170), Expect = 2e-32 Identities = 208/290 (72%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| ||||| || || ||| || ||| || || | |||| || ||||| ||| Sbjct 155843 AGACCAATTCCACCAGCTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATA 155902 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATA 69990 || || |||||||||||| |||| | ||||| |||||||| |||| ||| | | Sbjct 155903 CCATCAATGCTATCATCTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCAC 155962 Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| | |||||| | ||||| || || |||||||||||||| || || | ||| || Sbjct 155963 GTTCCAGAATTAAACAGAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTA 156022 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || || ||||| || | || || || ||||||||||| | | ||||||||||||| Sbjct 156023 TAAGTCTCAATGGCCGCTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAAC 156082 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGA 70160 || || || |||||||| | ||| ||| || |||| ||||| || Sbjct 156083 ATGTGTTGGGGTCGTTCAGCAACTTTCCCATTGATCTTCAGTAGGTAAGA 156132 Score = 93.3 bits (102), Expect = 6e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 69654 TTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGG 69713 ||| || || ||||| ||||| || | || || || || | |||||| |||||||| Sbjct 155178 TTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCATGG 155237 Query 69714 TTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGC 69773 ||| || || || || | | || ||||| || ||||||||||| || | |||||| || Sbjct 155238 TTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTTGC 155297 Query 69774 AGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGT 69827 ||| ||| || || | || ||| || |||| |||||| || | ||||| || Sbjct 155298 AGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGT 155351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 |||| || ||||| || || ||||| | || ||||||||||| ||||| || ||||| | Sbjct 150769 TGTAGATGTTACTTGTGTAAGGTTCAAAGGACTCATTATTTCCAAGAATCTGTGCAGTGG 150828 Query 68807 ATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCAT 68851 |||| |||||||| ||||| ||||| | ||| ||||| | |||| Sbjct 150829 ATGCTGTTGGCATTGGTGCAACCAACAGACTGTTTCTTAATCCAT 150873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888012422440