Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq293 111 2e-19 >seq293 Length=468840 Score = 111 bits (122), Expect = 2e-19 Identities = 215/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Plus Query 151857 TGGCACGTAGCAGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGG 151916 |||||| | | ||| | || || || || |||||||||||||||||||||| ||| || Sbjct 423912 TGGCACCTTGGTACTGTAGCCAGTCCCAATCCCCTCTGCACCGTTGACCAGAACCATGGG 423971 Query 151917 CACAATAGGGGCGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAA 151976 || |||||| ||| | ||||| || || ||||| ||| || || ||| | | Sbjct 423972 CAGTATAGGGCAGTACCATTCCGGTTCAACTGGTTGATTGTCGTCGTACAGGTACGTTA- 424030 Query 151977 AACGGAATTGTCA-GCCG-GATCG---AATATCCGTCGAGTCATAGGACTCAAACGCGTG 152031 | ||| || | || | ||| || | |||||| || ||||| | ||| Sbjct 424031 ----GGTTTGGCATGTCGTGTTCGGGAAACAAAAGTCGAGCCAAGGGACTAAGCATGGTG 424086 Query 152032 AAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCA 152091 |||||||| || | |||||| ||||| || ||||| | || || |||||||| ||| Sbjct 424087 AAGATGTAACGAGGGCTGGCAGCATCTTTTCCACCGTGAATACGAGTACCAAACTGGCCA 424146 Query 152092 GAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATC 152151 ||| | |||||||| | |||||| ||| || |||||||| ||||| || | || Sbjct 424147 ATGGGTTGAAGGAGGTTTACGTTGTTACTGCCAACAAAATTCTGGGCCAAGTTGATGATT 424206 Query 152152 GTGCCCTGCAGACT 152165 || ||| || ||| Sbjct 424207 GTTCCCATCAAACT 424220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199439875800