Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq37 167 2e-36 >seq37 Length=1179958 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || || | || ||||| ||||| ||||| | Sbjct 896142 ATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAGC 896083 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | || || ||| ||||| |||||||||||||| || |||||||| Sbjct 896082 GACTCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCAG 896023 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 ||||| || || | |||||| || ||||||||||| | ||| || | ||| ||||| Sbjct 896022 CAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGA-TGGCCGAACGCTGAGCGACTACAA 895964 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | ||| | ||||||||||| || || ||||| Sbjct 895963 TATTCAAAAGGAATCGACACTTCATCTAGTTTTGCGTTTACGTGGCGGCAT 895913 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || ||| | ||||| || ||||||||||| | Sbjct 895229 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACCATTACGCTGGAAGTGGAACCCAGC 895170 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| || ||| |||||||||||||| || || || ||||| ||||| Sbjct 895169 GACTCCATCGAGAATGTGAAAACCAAAATTCAAGACAAGGAGGGAATCCCACCAGATCAG 895110 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||| || || || |||||||| | ||| | |||||||||| Sbjct 895109 CAGAGGCTTATTTTCGCAGGAAAGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAAC 895050 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | || |||||| |||| ||||| Sbjct 895049 ATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGCGTCTGCGCGGTGG 895003 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || || || | || |||||||| || ||||| Sbjct 896371 CATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAG 896312 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| || |||| || || ||| ||||| ||||||||||| || || ||||| || Sbjct 896311 CGACAGTATCGAGAATGTTAAGACAAAGATTCAGGACAAAGAAGGTATCCCTCCCGACCA 896252 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| ||||| | ||| ||||| |||||||||||| | ||| | ||| ||||| Sbjct 896251 ACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAA 896192 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||||||| | ||| | || | |||||| | ||||| || Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGGAAT 896141 Score = 138 bits (152), Expect = 1e-27 Identities = 170/231 (74%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTT-GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||||| ||| || ||||| |||||||| || | || ||||| ||||| ||||| Sbjct 895686 ATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAAG 895627 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||||| || |||| || ||| || || |||||||||||||| || ||||| ||||| Sbjct 895626 CGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATCA 895567 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||| |||||| | ||||| | ||| | ||| ||||| Sbjct 895566 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895507 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||| || || | || |||||| | || || | ||||| || Sbjct 895506 CATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGGTAT 895456 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || |||||||| ||||| || || | || || |||||||| || || Sbjct 895918 CGGCATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCC 895859 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 | ||||| ||||| | || || ||| || |||||||||||||| || || ||||| Sbjct 895858 GAGTGACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGA 895799 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | |||||| || ||| | ||||| | ||| | |||||| Sbjct 895798 CCAACAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTA 895739 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || ||| | || |||| |||||| | || ||||| || Sbjct 895738 TAACATCCAGAAAGAATCCACCCTTCACCTGGTGTTGCGTCTTCGTGGTGGAAT 895685 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| || || | ||||| || ||||||||||| | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| || |||| || ||| ||| |||||||| ||||| || || ||||| ||||| Sbjct 895397 GACTCCATCGAGAACGTGAAAACAAAGATTCAAGATAAAGAGGGAATCCCACCAGATCAG 895338 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||| |||||| | ||||| | ||| | ||| |||||| Sbjct 895337 CAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAAC 895278 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | || |||||| | || || | ||||| || Sbjct 895277 ATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGGTAT 895228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434905238281920