Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq37 86.0 4e-12 >seq37 Length=1179958 Score = 86.0 bits (94), Expect = 4e-12 Identities = 166/238 (70%), Gaps = 18/238 (8%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||| || ||||| || || || ||| || || | || || ||| | Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 27849 CGACGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| | || || || ||||| | | || ||||||||||| | ||| || Sbjct 896083 CGACTCCATTGAAAACGTGAAGACAAAGATTCAG--GACAAAGAAGGCATCCCGCCCGAT 896026 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGA----CGAACGCAGCTTGTCCGA 27962 ||||| ||||| ||||| ||||| || |||||||| || ||||||| || ||| Sbjct 896025 CAGCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGC----TGAGCGA 895970 Query 27963 TTACAACATCCAAAAAGA---GAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || ||||| || || ||||| ||| | ||||||||||| ||||||||| Sbjct 895969 CTACAATATTCAAAAGGAATCGA-CACTT--CATCTAGTTTTGCGTTTACGTGGCGGC 895915 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || ||||| || ||| || || |||| || ||| | | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | | | ||| | | | ||||| | | || |||||||||||| | || || Sbjct 896310 GACAGTATCGAGAAT-GTTAAGACAAAGATTCAG--GACAAAGAAGGTATCCCTCCCGAC 896254 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || |||||||| || || || |||||||| |||| || | |||| ||| ||| Sbjct 896253 CAACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTAC 896194 Query 27967 AACATCCAAAAAGAG 27981 |||||||| |||||| Sbjct 896193 AACATCCAGAAAGAG 896179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355851899946267