Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq37 161 2e-34 seq250 91.5 3e-13 >seq37 Length=1179958 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | | || |||||||| ||||| ||||| |||||||||||||| ||||| Sbjct 895693 ACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGT 895752 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || ||||| || |||||||| || || |||||||| ||||||| || Sbjct 895753 TCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACC 895812 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| ||||| ||||||||| ||||||||||| || | |||| || || || || Sbjct 895813 TTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAG 895872 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || ||||| || | |||||| Sbjct 895873 CGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 136 bits (150), Expect = 9e-27 Identities = 162/217 (75%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||| || ||||| ||||| || || ||||| | |||||| Sbjct 895474 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895533 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || || | || || ||||| || | |||||| ||||| Sbjct 895534 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCT 895593 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 |||||||| |||||| || ||||||| ||| ||| |||||| ||||||||||| Sbjct 895594 TGGATCTTCGTTTTCACATTCTCGATGGAGTC---GCTTGGTTCAACTTCGAGAGTGATG 895650 Query 211080 GTCTTTCCCGTGAGAGTCTTTAC-AAACACCTGCATT 211115 || ||||| || || || || || ||| | ||||||| Sbjct 895651 GTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 120 bits (132), Expect = 7e-22 Identities = 155/213 (73%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| || || || ||||| || || || || || || | ||||||||| Sbjct 895934 ACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCC 895993 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 | ||||| || ||||| || | || || || || || || | ||||| |||||||| Sbjct 895994 AATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGA 896053 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTC 211082 |||||| ||||||||||| |||| ||| ||| |||||| || |||||||| || Sbjct 896054 ATCTTTGTCTTCACGTTTTCAATGGAGTC---GCTTGGTTCAACTTCCAGAGTGATGGTT 896110 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 |||||||| || || || || || | ||||||| Sbjct 896111 TTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||||||||| || ||||| ||||| || || ||||| | |||||| Sbjct 895246 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895305 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || || | || || || || || | ||| || || || Sbjct 895306 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCT 895365 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || |||||| ||||||||| ||||||| ||| | ||| || || || || || || Sbjct 895366 TGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTT 895425 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || | ||||| || || | ||||| Sbjct 895426 TTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 >seq250 Length=508743 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 |||| |||||||| ||||| | ||| ||||| ||||||||||| |||||||| || || | Sbjct 122282 CTTTCTGGATGTTGTAATCAGAAAGTGTCCTGCCATCTTCCAGTTGCTTGCCGGCAAAAA 122223 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 | || || |||||||| || |||| ||||| Sbjct 122222 TCAGACGCTGTTGGTCTGGGGGAATTCCTT 122193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159116044191665