Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq37 150 1e-31 >seq37 Length=1179958 Score = 150 bits (166), Expect = 1e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||| | | Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | |||||| | || ||| ||| ||||||||||| | ||||| ||||| Sbjct 896083 CGACTCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCA 896024 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || ||| ||||||| | || || | |||| ||||| Sbjct 896023 GCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACAA 895964 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||| || || ||| | ||| ||||||| Sbjct 895963 TATTCAAAAGGAATCGACACTTCATCTAGTTTT 895931 Score = 149 bits (164), Expect = 4e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || |||||||| |||||||| || ||||| | | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||| | | || ||| |||| ||||| | || |||||||||||| | || || || || Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAAGA-TTCAGGACAAAGAAGGTATCCCTCCCGACCA 896252 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| ||||| || || ||||| ||| ||||||||| || || || |||| ||||| Sbjct 896251 ACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAA 896192 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || |||||||| || | ||| |||| | | ||| |||| ||| Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGGA 896143 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| |||||||| || |||||||| ||||| || ||||| || | | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||| || |||||| | || ||| || |||||||||||| | || || || ||| Sbjct 895854 GACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCAA 895795 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || ||||| || ||||| ||||| | || || | ||||||| ||| Sbjct 895794 CAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAAC 895735 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 895734 ATCCAGAAAGAATCCAC 895718 Score = 122 bits (134), Expect = 6e-23 Identities = 157/213 (74%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTC-GTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668 |||||||||||| || |||||||| || |||||||| ||||||||||||||||| | | Sbjct 895687 AATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAA 895628 Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||| | | || ||| | ||||| || | | ||||||||||| | || || ||| Sbjct 895627 GCGACTCCATCGAGAATGTGAAAACGAAGA-TCCAAGACAAAGAAGGAATCCCACCTGAT 895569 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || ||||| |||||||| ||||| | || || | |||| ||| Sbjct 895568 CAGCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTAC 895509 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||||| ||||| || ||||| | || || ||| Sbjct 895508 AACATTCAAAAGGAATCCACTCTTCACTTGGTT 895476 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||| | || || || || || || || ||||| || ||| Sbjct 895229 ATGCAAATCTTCGTCAAGACCTTGACTGGGAAGACCATTACGCTGGAAGTGGAACCCAGC 895170 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||| | | || ||| | ||||| |||| || ||||| || || | || |||||||| Sbjct 895169 GACTCCATCGAGAATGTGAAAACCAAAA-TTCAAGACAAGGAGGGAATCCCACCAGATCA 895111 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || ||||||| | || || || |||||||||| Sbjct 895110 GCAGAGGCTTATTTTCGCAGGAAAGCAGTTGGAAGATGGCCGTACCTTGAGCGATTACAA 895051 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || | ||| | || || | |||| || ||| Sbjct 895050 CATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGCGTCTGCGCGGTGGA 895002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999626709868