Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq37 158 3e-33 seq2421 145 2e-29 seq1742 141 2e-28 >seq37 Length=1179958 Score = 158 bits (174), Expect = 3e-33 Identities = 168/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || ||||||||||| |||| || |||||| || || Sbjct 895693 ACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGT 895752 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| || ||||| || |||||||| || || ||||||||||| |||||||| Sbjct 895753 TCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACC 895812 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||||||||||||| |||||| ||| || | ||| | || || || | Sbjct 895813 TTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAG 895872 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || || |||| ||||||| ||| | ||||| Sbjct 895873 CGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 ||||| || ||||| || || ||||| | ||||||||| ||| || | |||||||| Sbjct 895021 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCCATCTTCC 895080 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 | |||||| || ||||| ||||| | || || || || || || || ||||||||||| Sbjct 895081 AACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTTGA 895140 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 || || |||||| ||||||| ||| || |||||| || | ||| || ||||| Sbjct 895141 ATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAATGGTCTTC 895200 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || || | ||| | |||||| Sbjct 895201 CCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || || || || || ||||| |||| ||||| ||| ||| || | || ||| Sbjct 896159 AGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCT 896218 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||| ||||||||||| || |||||||| ||||| Sbjct 896219 TCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCC 896278 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||| ||| ||||| |||| | ||| || || | ||||| || Sbjct 896279 TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTT 896338 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 896339 TTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||||||||| ||||| | ||||| ||| || |||| |||||| Sbjct 895246 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895305 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || || | || || || || || || || || || ||| Sbjct 895306 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCT 895365 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| ||||| ||||||| ||| || |||||| || | || || || Sbjct 895366 TGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTT 895425 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | |||||| Sbjct 895426 TTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 104 bits (114), Expect = 6e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||||||||| ||||| | ||||| ||| || |||| |||||| Sbjct 895474 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895533 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || || | || || || || || || ||||| |||||| Sbjct 895534 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCT 895593 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||| ||| | ||| || || | ||||| || Sbjct 895594 TGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTT 895653 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || |||| ||||| Sbjct 895654 TTTCCGGTCAGGGTTTT 895670 >seq2421 Length=18479 Score = 145 bits (160), Expect = 2e-29 Identities = 127/158 (80%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || ||||| || || ||| ||||||| ||||| ||| |||||||||| ||||| |||||| Sbjct 16834 CATCTTTATAATGTAATTGTTACGGCACATGCTTTTATTATGATTTTTTTTTTGGTTATG 16893 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || |||||||| || || |||||||| || ||||| || ||||||||||| || Sbjct 16894 CCAGTGATGATAGGGGGGTTTGGAAATTGGTTGGTTCCACTATATATTGGTGCTCCCGAC 16953 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 ||||| || || ||||||| ||||| |||||||| || Sbjct 16954 ATGGCCTTCCCCCGGCTTAATAATATTAGTTTTTGGTT 16991 >seq1742 Length=18242 Score = 141 bits (156), Expect = 2e-28 Identities = 127/158 (80%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 || ||||| || || ||| ||||||| ||||| ||| |||||||||| ||||| |||||| Sbjct 4435 CATCTTTATAATGTAATTGTTACGGCACATGCTTTTATTATGATTTT-TTTTTGGTTATG 4493 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || || |||||||| || || |||||||| || ||||| || ||||||||||| || Sbjct 4494 CCAGTGATGATAGGGGGGTTTGGAAATTGGTTGGTTCCACTATATATTGGTGCTCCCGAC 4553 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATT 7709 ||||| || || ||||||| ||||| |||||||| || Sbjct 4554 ATGGCCTTCCCCCGGCTTAATAATATTAGTTTTTGGTT 4591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192494208800174