Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 8e-16 >seq4 Length=2104981 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 4863 TCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAA 4922 || || |||||||| || || |||||||| || || |||| || || ||||| | || Sbjct 1667929 TCAATTGCAATCTGGAAACCATAAAAGCACCTTGCCTCTGGAACCTGGACTTCCTGACTG 1667870 Query 4923 AATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACA 4982 || | |||||||||||||| || || || || ||||| || ||||| || ||||| ||| Sbjct 1667869 AAGCACTCTACTAAGTTTTCATTGACAATGCCATCACTTGCAGCAAAGAAAGCCAAGACA 1667810 Query 4983 TGAGATATAAAGTA 4996 || || || ||||| Sbjct 1667809 TGCGAGATGAAGTA 1667796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 4365 AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAG-TTCGCAGTT 4423 || || ||||| | | |||||| ||||||||||| || || ||||||| | || || Sbjct 1669049 AGGGCCACAAGAAGCCTGTCAGCAACAAATTCTATGTATTGCTTCATGAGAGTATCA-TT 1668991 Query 4424 AATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGC 4483 || ||||| | | | || || || || | || | |||||| || || ||| || || Sbjct 1668990 CATGCCAATGAGTTTGACTGGAAGGGCATCAGTGAGAAACTCCTGCTCAATAACAACAGC 1668931 Query 4484 TTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAA 4543 || | | || ||||| || | |||| |||||||| || | | |||| ||||| Sbjct 1668930 ATCCTTAACAATTTCTTTGATCCTCTCTTCTGATGGTTTGTTGATAAGGTATGAAAACAT 1668871 Query 4544 TAAACACGCAAAATCACAATGCAAACC 4570 ||||| ||||| ||||| || ||||| Sbjct 1668870 CAAACAGGCAAAGTCACAGTGTAAACC 1668844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427036999501193