Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq283 149 9e-31 seq4 84.2 3e-11 >seq283 Length=477172 Score = 149 bits (164), Expect = 9e-31 Identities = 211/294 (72%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTA 76897 || || |||||| | || ||||| || | | || || ||||| || || ||| Sbjct 155807 ATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCAGACCAATTCCACCAGCTGATTTG 155866 Query 76898 GAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATG 76957 || ||| || || | |||| || ||||| || || || || |||||||| |||| Sbjct 155867 GAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCATCTGACATG 155926 Query 76958 TTAAGAAGAAAACAGCTAGACATTTGATGAT-GAACAGTTCCTGCATTAAACAATGTAGG 77016 | ||||| |||||||| |||| ||| | | | || ||||| | |||||||| ||||| Sbjct 155927 GTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCAC-GTTCCAGAATTAAACAGAGTAGG 155985 Query 77017 AGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTAT 77076 || ||||||||||||||||| || || | || || || || ||||| | |||| || Sbjct 155986 CGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCCGCTTTGAT 156045 Query 77077 ATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 || ||||||||||| || | ||||||||||||||| || || |||||||| Sbjct 156046 GTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGTTC 156099 Score = 95.1 bits (104), Expect = 2e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 76656 GTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATG 76715 |||| || || ||||| || || || | || ||||| || | |||||| ||||||| Sbjct 155177 GTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCATG 155236 Query 76716 GTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGG 76775 |||| || || || || | |||| ||||| || || |||||||| || | ||||| | Sbjct 155237 GTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTTG 155296 Query 76776 CAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGT 76830 |||| ||| ||||| | |||||| || |||| || || || || ||||| || Sbjct 155297 CAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGT 155351 >seq4 Length=2104981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 |||||||| || | || | |||||| || || || ||||| ||||||||||| || ||| Sbjct 1669487 TTTTGGTACTCTGCAACTCTTTTCTCAAAGAAGTTTGTTTTCCCTTCCAATGAGATGTTT 1669428 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAA 46432 ||||| || ||||| ||||| | |||||| |||| Sbjct 1669427 TCCATGAAGTCAAATGGATTCGGAACATTGTAAA 1669394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712912824822720