Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq37 136 9e-27 >seq37 Length=1179958 Score = 136 bits (150), Expect = 9e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 |||||||||||||||||||| ||||| |||||||||||| || || | |||||||| Sbjct 895021 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTCAAGGTACGGCCATCTTCC 895080 Query 151956 A--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 | ||||| || ||||| |||||||||||||| || | | |||||| ||||| |||| Sbjct 895081 AACTGCTTT--CCTGCGAAAATAAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCTT 895138 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTT 152073 ||||||| ||| ||| |||| | | ||| || ||||| || ||||| || | Sbjct 895139 GAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACTTCCAGCGTAATGGTCT 895198 Query 152074 TGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || | ||||| ||||||| ||||| Sbjct 895199 TCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 114 bits (126), Expect = 3e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || ||||| |||||||| ||| | |||| |||||||| | Sbjct 895251 CAAG-TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGA 895309 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || ||||||||||| || | | |||||| || || ||||||| Sbjct 895310 GTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCTTGAA 895369 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | ||| ||| || |||| | | ||| || ||||| || ||||| ||||| | Sbjct 895370 TCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTTTTC 895429 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | ||||| ||||||| ||||| Sbjct 895430 CAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| |||||||| || |||||||| ||||||||||| ||| || || | || ||| Sbjct 896159 AGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCT 896218 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || || ||||| || | | ||| ||||| | | ||| ||||| || || Sbjct 896219 TCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCC 896278 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| || ||| |||| | ||||| || || |||||||| || ||| Sbjct 896279 TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTT 896338 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||||||||||| |||||| Sbjct 896339 TTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 111 bits (122), Expect = 4e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| || || ||||| |||||||| ||| | |||| |||||||| | Sbjct 895479 CAAG-TGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCGA 895537 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| |||||||| || ||||||||||| || | | ||||||||| || ||||| | Sbjct 895538 GTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGGA 895597 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||| ||| |||| | | ||| || ||||| ||||| || ||||| | Sbjct 895598 TCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTTC 895657 Query 152077 CCGTGAGAGTCTTCAC-GAAGACCTGCATT 152105 | || || || ||||| || | ||||||| Sbjct 895658 CGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || |||||||| || || || ||||| || ||||| ||| | |||| |||||||| Sbjct 895934 ACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCC 895993 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 | ||||||||||| || | || |||||| || | || ||| ||||| || || ||| Sbjct 895994 AATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGA 896053 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTG 152075 || ||| || || | || | | ||| || ||||| ||||| || ||||| Sbjct 896054 ATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTT 896113 Query 152076 CCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || || ||||| | ||||||| Sbjct 896114 CCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 93.3 bits (102), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || ||||| || || ||||| |||||||| |||||| | |||| |||||||| Sbjct 895706 ACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATCTTCG 895765 Query 151956 AG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTT 152013 || ||||| ||||||||||| || | ||| ||||| | | || ||||| || |||| Sbjct 895766 AGTTGCTTT--CCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTGTCTT 895823 Query 152014 GAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAG 152070 | || ||| || || | || | ||| ||| ||| |||||||| || || | Sbjct 895824 GGATCTTTGTCTTCACGTTTTCAATAGAGTC---ACTCGGCTCGACTTCAAGCGTGATGG 895880 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || ||||| | |||||| Sbjct 895881 TTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153785009560491