Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq37 149 1e-30 seq915 89.7 1e-12 seq292 89.7 1e-12 seq323 86.0 1e-11 seq151 86.0 1e-11 >seq37 Length=1179958 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || | ||||| || | ||| |||||| |||||||| || || Sbjct 895688 CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTC 895747 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || |||||||| || ||||| || ||||| ||||| | ||| |||||||| ||| Sbjct 895748 AGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGA 895807 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || |||||||||||||||| || ||| | || |||| ||| | |||||| Sbjct 895808 ATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACT 895867 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || || || |||| || || ||||| |||||||| Sbjct 895868 TCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||||||| |||| || | ||| ||| ||||| ||||||||||| Sbjct 895230 ACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCT 895289 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || |||||||| ||||| || |||| | || || || || Sbjct 895290 CAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGG 895349 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| || ||||| ||||||| ||| ||| | ||||| | ||| | ||| || Sbjct 895350 GATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCAC 895409 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || || || ||||| ||||| ||||| || ||||| Sbjct 895410 TTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 136 bits (150), Expect = 8e-27 Identities = 169/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | ||||||||| |||| || | ||| ||| ||||| ||||||||||| Sbjct 895458 ACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCT 895517 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || |||||||| || |||||||| ||||| || |||| | || || ||| || Sbjct 895518 CAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGG 895577 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||||||||| | ||| || | ||||| | ||| | ||| || Sbjct 895578 GATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAAC 895637 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC-GAATATCTGCATT 283100 |||||||||||| || || || |||| || || || || ||||||||| Sbjct 895638 TTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 116 bits (128), Expect = 8e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTC-AGC 282931 ||||| | || ||||| || ||||| | || ||||| |||||||||||||| | Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| || || | ||| || || || || || || || |||||||| || Sbjct 896204 AAG-GTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGG 896262 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || ||||| || ||||||| || || | |||||| |||| | ||| || Sbjct 896263 GATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAAC 896322 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || |||||||| || || || || | ||||| ||||| |||||||| Sbjct 896323 CTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 93.3 bits (102), Expect = 9e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 ||||| ||||| || | || ||||| | || || ||||| |||||||| || | Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || |||||||| || | || || || || || || | | || || || || Sbjct 895063 AAG-GTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGG 895121 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||| || || | ||| || | ||||| | ||| | ||| || Sbjct 895122 GATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCAC 895181 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || ||||| || ||||| ||||| ||||| || ||||| Sbjct 895182 TTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 >seq915 Length=125912 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 84708 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 84652 >seq292 Length=469541 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 347106 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 347050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 348978 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 348922 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 350850 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 350794 >seq323 Length=434814 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 289629 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 289685 >seq151 Length=696129 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 241112 TAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 241056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046706731131334