Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq37 156 1e-32 >seq37 Length=1179958 Score = 156 bits (172), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || |||||||| ||||| || ||||||||||| ||||| || || || || || || Sbjct 895911 CAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGA--GCCGAGTG 895854 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || | || || ||||| || |||||| || ||||||||||| || ||||| ||||| | Sbjct 895853 ACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCAAC 895794 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| || ||||||||||| | || || |||||||||| Sbjct 895793 AGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAACA 895734 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||| |||||||| || || || || || ||| Sbjct 895733 TCCAGAAAGAATCCACCCTTCACCTGGTGTTG 895702 Score = 150 bits (166), Expect = 4e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || |||||||| || ||||| || |||||| | ||| Sbjct 895454 CAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGCGAC 895395 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||||| ||| ||||||||| || ||||| |||||||| || || ||||| Sbjct 895394 TCCATCGAGAACGTGAAAACAAAGATTCAAGATAAAGAGGGAATCCCACCAGATCAGCAG 895335 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || |||||||||||||| ||||||||||| | || || ||| || ||| | Sbjct 895334 AGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAACATT 895275 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 ||||| ||||| || || || |||| || Sbjct 895274 CAAAAGGAATCCACTCTTCA-CTTGGTT 895248 Score = 150 bits (166), Expect = 4e-31 Identities = 159/207 (77%), Gaps = 7/207 (3%) Strand=Plus/Minus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACA 177984 |||| |||||||| || || |||||||| ||||| ||||| || ||| ||| ||| Sbjct 895678 TTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAAGC---GACT 895622 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 |||||||||| || ||| ||||| || ||||||||||||||||| || || ||||| Sbjct 895621 CCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATCAGCAGA 895562 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 | || || |||||||||||||| ||||||||||| | || || ||| || ||| | | Sbjct 895561 GGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAACATTC 895502 Query 178105 AAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || || || |||| || Sbjct 895501 AAAAGGAATCCACTCTTCA-CTTGGTT 895476 Score = 141 bits (156), Expect = 2e-28 Identities = 160/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || |||||||| ||||| || || |||||||| ||||| || || || ||| ||| Sbjct 896139 CAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAGC--- 896083 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||| |||| || ||||| || ||||||||||||||||||||| ||||| || || ||| Sbjct 896082 GACTCCATTGAAAACGTGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATCAG 896023 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || |||||||| || || | |||||||| | || || ||| || || Sbjct 896022 CAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACAAT 895963 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTG 178133 | ||||| ||||| ||||| ||||| |||||| Sbjct 895962 ATTCAAAAGGAATCGACACTTCATCTAGTTTTG 895930 Score = 138 bits (152), Expect = 3e-27 Identities = 159/210 (76%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCA 177980 || || |||||||| || || ||||||||||| ||||| || ||||| ||| ||| Sbjct 896367 CAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC--- 896311 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||| |||||||| || || ||||||||||||||||||||| |||||||| ||||| Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAAGATTCAGGACAAAGAAGGTATCCCTCCCGACCAA 896251 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAA 178099 || ||| | || ||||| || || || | ||||| || | || |||| ||| || || Sbjct 896250 CAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTAC-CTTGAGCGACTACAA 896192 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||| ||||| || || || ||||| || Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCATCTAGT 896162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203693861386674