Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq37 136 4e-27 >seq37 Length=1179958 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| |||||||| || || ||| || ||||| |||||||| ||| Sbjct 895688 CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTC 895747 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || ||||| ||||| |||||||| || || ||||||||||| | ||| Sbjct 895748 AGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGA 895807 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || ||||| ||| ||| |||| ||| | | || ||| |||| ||| || Sbjct 895808 ATACCTTCTTTGTCTTGGATCTTTGTCTTC-ACGTTTTCAATAGAGTCACTCGGCTCGAC 895866 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || | ||| || ||||| || ||||| || |||||||||||||||||| Sbjct 895867 TTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 Score = 104 bits (114), Expect = 2e-17 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| |||| ||| || || ||||| || || ||||| ||||| || |||||| Sbjct 895915 GCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCT 895974 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || | ||||| |||||||| |||| ||||| || || | || Sbjct 895975 CAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGG 896034 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGT-GTCGCTCGACTCC 41812 | || || |||||| ||| | |||| ||||| || || | |||||| | || Sbjct 896035 GATGCCTTCTTTGTCC-TGAATCTTTGTCTTCA-CGTTTTCAATGGAGTCGCTTGGTTCA 896092 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || |||| || || ||||| |||||||| || || |||||||||||||| Sbjct 896093 ACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || ||||| || || ||| ||||| ||||| |||||| | ||| || |||| || Sbjct 896162 ACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCC 896221 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||||| ||||| || | ||||||||||| | || | | || |||||| || Sbjct 896222 AATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCC-TG 896280 Query 41774 ATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | | |||| ||| || ||| || ||||||| | || ||||| | || || ||| Sbjct 896281 AATCTTTGTCTTAACATTCTCGATAC--TGTCGCTTGGTTCAACCTCAAGAGTGATGGTT 896338 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || |||||||| ||||| ||||||||| Sbjct 896339 TTTCCTGTAAGCGTCTTCACGAAGATCTGCATG 896371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462290009525200