Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Adineta_20vaga_20[genbank_20GCA_5F000513175.1_202013-11-26] 36,167 sequences; 217,933,776 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq417 215 6e-51 seq83 206 3e-48 seq15 125 9e-24 seq163 100 4e-16 >seq417 Length=153455 Score = 215 bits (238), Expect = 6e-51 Identities = 239/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | || ||||| || | | |||||||||||| |||||||| |||||||| || Sbjct 94778 ATCTTTGATGTATGTATCAATAAGTAAACTATACATTTCTGAATGAATATTTTCAATTGC 94837 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || ||||||||||||||||| | || || | || || ||||| ||||| |||| Sbjct 94838 AATTTGAAATCCGTAGAAACAACGTGCTTCAGGTATTTGAACTTCACCGGAAAATTGTTC 94897 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| || || |||||||| || |||||||| ||||| |||||||| || Sbjct 94898 AACTAAATTTTCACCGACAATACCATCACTTGCAGCAAAAAAAGCCAAGACATGTTTGAT 94957 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 |||||||| ||| || || |||| |||||| | ||||| || | || ||| || Sbjct 94958 AAAATATTGTTCATCGGGAGTTAAACGTAACCAATCTCTCATATCATTGGCTAAATCAAC 95017 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 34141 |||||| |||||||| |||||| ||| |||||| | ||||| || |||||||| Sbjct 95018 TTCTTCACATGTCCAAATAGATGCCAATGCACGTTTATAGAATTTCCATATATCATGATA 95077 Query 34142 TTGGATTGGGAAAATAACA 34160 || ||||| || | |||| Sbjct 95078 TTTTATTGGAAATAGAACA 95096 >seq83 Length=472686 Score = 206 bits (228), Expect = 3e-48 Identities = 237/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||| | || ||||| || | | |||||||||||| |||||||| |||||||| || Sbjct 432789 ATCTTTGATGTATGTATCAATAAGTAAACTATACATTTCTGAATGAATATTTTCAATTGC 432730 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || |||||||| |||||||| | || || | || || ||||| ||||| |||| Sbjct 432729 AATTTGAAATCCATAGAAACAACGTGCTTCAGGTATTTGAACTTCACCGGAAAATTGTTC 432670 Query 33962 TGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 34021 ||||||||||| || || |||||||| || |||||||| || || |||||||| || Sbjct 432669 AACTAAATTTTCACCGACAATACCATCACTTGCAGCAAAAAAAGCTAAGACATGTTTGAT 432610 Query 34022 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081 |||||||| ||| || || |||| |||||| | ||||| || | || ||| || Sbjct 432609 AAAATATTGTTCATCGGGAGTTAAACGTAACCAATCTCTCATATCATTGGCTAAATCAAC 432550 Query 34082 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 34141 |||||| |||||||| |||||| ||| |||||| | ||||| || |||||||| Sbjct 432549 TTCTTCACATGTCCAAATAGATGCCAATGCACGTTTATAGAATTTCCATATATCATGATA 432490 Query 34142 TTGGATTGGGAAAATAACA 34160 || ||||| || | |||| Sbjct 432489 TTTTATTGGAAATAGAACA 432471 >seq15 Length=819560 Score = 125 bits (138), Expect = 9e-24 Identities = 368/564 (65%), Gaps = 5/564 (1%) Strand=Plus/Plus Query 62835 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCC 62894 ||||| | |||| ||| |||||||| || | ||| | || || || | |||| Sbjct 550420 GGATAGAAGTTAACATCAATAATTTTGTTCAAATTACGTACGATAACACTTGTTACATGA 550479 Query 62895 TTCAGTTTGAGAAAATCAAATCGCCCATCTATT---ACAAACATGTTCAATGCAACAGAT 62951 ||||| |||||||||| | |||| ||||| || | ||||| ||| Sbjct 550480 ACAAGTTTATCAAAATCAAATGTTCGATCTGGACGAACAAATCGATTAAGTGCAATTGAT 550539 Query 62952 GCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGA 63011 |||| |||||| || || || ||||| | | | ||||| || || || || || | | Sbjct 550540 GCCAAATTACAAACAGCAACTTCATTTGGTGCTGTATATTCAATAATTTCCGTACATAAA 550599 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || ||| | || || || | || |||||||||||| || |||||| ||| ||| Sbjct 550600 TTTGAACAATGAATTGTACCAAGATGTTGTTGATTACTTTTAGCATTACACTGATCTTTA 550659 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || | |||||||| |||||||||||||| || | | | ||| || ||| | || Sbjct 550660 TATAACATGAATGGTGTACCAGTTTCAATTTGTGCATTGACAATAGCAAACCAAAGATCT 550719 Query 63132 CGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTC 63190 | || || ||| || | | | |||| || ||| ||| ||||| || ||| Sbjct 550720 TGTGCTTTAATTGTACGTCGTCCAAGACCTTCCT-GTTCATATTTTGTATATAAATCTTC 550778 Query 63191 GAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCA 63250 ||| || | |||||||||||| | || ||||| || |||||||| || | ||| Sbjct 550779 GAATTCTTTTCCCCAAACATTTTGTAAATGTTTACATTGATGTGGACACATTAATGTCCA 550838 Query 63251 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 63310 | | ||| | | | || || |||||| | ||| |||||||| | |||| ||| || Sbjct 550839 TTTTTCGTTAGCTTCAACACGACGCATAAATAAATCCGGAATCCATAAAGCTGGAAAGAG 550898 Query 63311 ATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 63370 ||| | | | | ||| || || ||||| ||| ||| | ||| | | || Sbjct 550899 ATCACGAGCACGTTTTTCTTCAGCACCAGTATTTTTTCGTGCATCCAAAAACTCAAAGAT 550958 Query 63371 ATCAGAATGCCACGGTTCCAAGTA 63394 ||| | |||||| |||||||| || Sbjct 550959 ATCCGCATGCCATGGTTCCAAATA 550982 Score = 118 bits (130), Expect = 1e-21 Identities = 300/454 (66%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 62942 TGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTC 63001 ||||| ||||||| |||||| || || || ||||| | | | ||||| || || || Sbjct 384303 TGCAATTGATGCCAAATTACAAACAGCAACTTCATTTGGTGCTGTATATTCAATAATTTC 384244 Query 63002 AGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACA 63061 || || | ||| ||| | || || || | || |||||||||||| || ||||| Sbjct 384243 CGTACATAAATTTGAACAATGAATTGTACCAAGATGTTGTTGATTACTTTTAGCATTACA 384184 Query 63062 CGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTT 63121 | ||| ||||| || |||||||| |||||||||||||| || | | | ||| || Sbjct 384183 CTGATCTTTATATAGCATGAATGGTGTACCAGTTTCAATTTGTGCATTGACAATAGCAAA 384124 Query 63122 CCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATAGAGTAT 63180 ||| | || | || || ||| || | | | |||| || ||| ||| |||| Sbjct 384123 CCAAAGATCTTGTGCTTTAATTGTACGTCGTCCAAGACCTTCCT-GTTCATATTTTGTAT 384065 Query 63181 ACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACA 63240 | || |||||| || | |||||||||||| | || ||||| || ||||||| Sbjct 384064 ATAAATCTTCGAATTCTTTTCCCCAAACATTTTGTAAATGTTTACATTGATGTGGACACA 384005 Query 63241 TCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAG 63300 | || | ||| | | ||| | | | || || |||||| | ||| |||||||| | | Sbjct 384004 TTAATGTCCATTTTTCGTTAGCTTCAACACGACGCATAAATAAATCCGGAATCCATAAGG 383945 Query 63301 CTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGA 63360 || ||| ||||| | | | | ||| || || ||||| ||| ||| | | Sbjct 383944 CTGGAAAGAGATCACGAGCACGTTTTTCTTCAGCACCAGTATTTTTTCGTGCATCCAAAA 383885 Query 63361 ACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 | | | ||||| | |||||| |||||||| || Sbjct 383884 ATTCAAAGATATCCGCATGCCATGGTTCCAAATA 383851 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || ||||| || | || || | || || |||||||||||||| || | || |||||| Sbjct 383354 CCTGCATTGAAAAGTGTTGGTGTTGCATGTGTAAACCATTTTTCTGATAATAAATTGTAT 383295 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || |||||||| || ||||| || |||||| || || || |||||||| | ||| Sbjct 383294 GTTTCAATAGCACTATCAATATCTGATCCATGAATACCAACAGCAACACGCATAAGCATA 383235 Query 63786 TGCTGAGGTCTTTCAACAAT 63805 || || |||| ||||||||| Sbjct 383234 TGTTGTGGTCGTTCAACAAT 383215 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 63666 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63725 || ||||| || | || || | || || |||||||||||||| || | || |||||| Sbjct 551482 CCTGCATTGAAAAGTGTTGGTGTTGCATGTGTAAACCATTTTTCTGATAATAAATTGTAT 551541 Query 63726 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63785 || |||||||| || ||||| || |||||| || || || |||||||| | ||| Sbjct 551542 GTTTCAATAGCACTATCAATATCTGATCCATGAATACCAACAGCAACACGCATAAGCATA 551601 Query 63786 TGCTGAGGTCTTTCAACAAT 63805 || || |||| ||||||||| Sbjct 551602 TGTTGTGGTCGTTCAACAAT 551621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| ||||| ||||| | ||| | || ||| | ||| |||||||| ||||| | Sbjct 384989 TACTTGAAATTCACCAGAAAGTACACGTCGTACGTATAAATTGCTGGTATATGGTTCAAT 384930 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || || || || || | |||||| || || || || || ||||| ||||| | |||||| Sbjct 384929 TGATTCGTTGTTACCAAGAATTTGTGCTGTAGAAGCTGTTGGCATTGGTGCTAACAATAA 384870 Query 62507 ACTATTTCTAAGACCGTAT 62525 |||||| | | ||| ||| Sbjct 384869 ACTATTACGAGTACCATAT 384851 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| ||||| ||||| | ||| | || ||| | ||| |||||||| ||||| | Sbjct 549844 TACTTGAAATTCACCAGAAAGTACACGTCGTACGTATAAATTGCTGGTATATGGTTCAAT 549903 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || || || || || | |||||| || || || || || ||||| ||||| | |||||| Sbjct 549904 TGATTCGTTGTTACCAAGAATTTGTGCTGTAGAAGCTGTTGGCATTGGTGCTAACAATAA 549963 Query 62507 ACTATTTCTAAGACCGTAT 62525 |||||| | | ||| ||| Sbjct 549964 ACTATTACGAGTACCATAT 549982 >seq163 Length=332407 Score = 100 bits (110), Expect = 4e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| || ||||| ||||| | ||||||||||||||||||||| |||||||| || Sbjct 173322 ATCTTTAATGTACGTATCAATCAATAAACTATACATTTCCGAATGAATATTTTCAATTGC 173263 Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTC-GGTAATCTGCACTTCTGTACAAAATCGTT 33960 || ||||| || |||||||| | || || |||||| || ||||| | ||||| || Sbjct 173262 TATTTGAAAACCATAGAAACAACGTGCTTCAGGTAAT-TGAACTTCGGATGAAAATTTTT 173204 Query 33961 CT 33962 || Sbjct 173203 CT 173202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629532867335760