Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Adineta_20vaga_20[genbank_20GCA_5F000513175.1_202013-11-26] 36,167 sequences; 217,933,776 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq417 215 7e-51 seq83 206 4e-48 seq15 147 3e-30 seq163 89.7 7e-13 >seq417 Length=153455 Score = 215 bits (238), Expect = 7e-51 Identities = 239/319 (75%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | |||||||| || | | ||||||||||||||||||||| |||||||| || Sbjct 94778 ATCTTTGATGTATGTATCAATAAGTAAACTATACATTTCTGAATGAATATTTTCAATTGC 94837 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || ||||||||||||||||| | || || | | || ||||| ||||| |||| Sbjct 94838 AATTTGAAATCCGTAGAAACAACGTGCTTCAGGTATTTGAACTTCACCGGAAAATTGTTC 94897 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | |||||||||| || || || ||||| || |||||||| ||||| |||||||| || Sbjct 94898 AACTAAATTTTCACCGACAATACCATCACTTGCAGCAAAAAAAGCCAAGACATGTTTGAT 94957 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 |||||||| ||| || || ||||| |||||| | ||||| || | || ||| || Sbjct 94958 AAAATATTGTTCATCGGGAGTTAAACGTAACCAATCTCTCATATCATTGGCTAAATCAAC 95017 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| ||||||| ||||| ||| |||||| | ||||| ||||||||||| Sbjct 95018 TTCTTCACATGTCCAAATAGATGCCAATGCACGTTTATAGAATTTCCATATATCATGATA 95077 Query 42625 TTGAATTGGGAAAATAACA 42643 || ||||| || | |||| Sbjct 95078 TTTTATTGGAAATAGAACA 95096 >seq83 Length=472686 Score = 206 bits (228), Expect = 4e-48 Identities = 237/319 (74%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||| | |||||||| || | | ||||||||||||||||||||| |||||||| || Sbjct 432789 ATCTTTGATGTATGTATCAATAAGTAAACTATACATTTCTGAATGAATATTTTCAATTGC 432730 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTC 42444 || |||||||| |||||||| | || || | | || ||||| ||||| |||| Sbjct 432729 AATTTGAAATCCATAGAAACAACGTGCTTCAGGTATTTGAACTTCACCGGAAAATTGTTC 432670 Query 42445 AGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTAT 42504 | |||||||||| || || || ||||| || |||||||| || || |||||||| || Sbjct 432669 AACTAAATTTTCACCGACAATACCATCACTTGCAGCAAAAAAAGCTAAGACATGTTTGAT 432610 Query 42505 AAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTAC 42564 |||||||| ||| || || ||||| |||||| | ||||| || | || ||| || Sbjct 432609 AAAATATTGTTCATCGGGAGTTAAACGTAACCAATCTCTCATATCATTGGCTAAATCAAC 432550 Query 42565 TTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 |||||| ||||||| ||||| ||| |||||| | ||||| ||||||||||| Sbjct 432549 TTCTTCACATGTCCAAATAGATGCCAATGCACGTTTATAGAATTTCCATATATCATGATA 432490 Query 42625 TTGAATTGGGAAAATAACA 42643 || ||||| || | |||| Sbjct 432489 TTTTATTGGAAATAGAACA 432471 >seq15 Length=819560 Score = 147 bits (162), Expect = 3e-30 Identities = 375/565 (66%), Gaps = 7/565 (1%) Strand=Plus/Plus Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 ||||| | |||| ||| |||||||| || | ||| | || || || | |||| Sbjct 550420 GGATAGAAGTTAACATCAATAATTTTGTTCAAATTACGTACGATAACACTTGTTACATGA 550479 Query 71650 TTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACA---CGTTCAAG-GCAACAGA 71705 ||||| |||||||||| | | |||| || |||| || | ||| |||| || Sbjct 550480 ACAAGTTTATCAAAATCAAATGTTCGATCTGG-ACGAACAAATCGATTAAGTGCAATTGA 550538 Query 71706 TGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAG 71765 ||||| ||||||||| || || ||||| | | | ||||| |||||||| || || | Sbjct 550539 TGCCAAATTACAAACAGCAACTTCATTTGGTGCTGTATATTCAATAATTTCCGTACATAA 550598 Query 71766 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 71825 ||| ||| | || || || | || |||||||||||| || |||||| ||| || Sbjct 550599 ATTTGAACAATGAATTGTACCAAGATGTTGTTGATTACTTTTAGCATTACACTGATCTTT 550658 Query 71826 ATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 71885 ||| | || || || |||||||||||||| || | | | ||| || ||| | | Sbjct 550659 ATATAACATGAATGGTGTACCAGTTTCAATTTGTGCATTGACAATAGCAAACCAAAGATC 550718 Query 71886 TCGAGCCTTTATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 | | || || ||| || || | | | || || ||| |||| ||||||||| || Sbjct 550719 TTGTGCTTTAATTGTACGTCGTCCAAGACCTTCCT-GTTCATATTTTGTATATAAATCTT 550777 Query 71945 CGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACC 72004 |||| || | ||||||| |||| | ||| ||||| || |||||||| |||| || Sbjct 550778 CGAATTCTTTTCCCCAAACATTTTGTAAATGTTTACATTGATGTGGACACATTAATGTCC 550837 Query 72005 ACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 72064 | | | | | | | | || || |||||| | ||| |||||||| | |||| ||| | Sbjct 550838 ATTTTTCGTTAGCTTCAACACGACGCATAAATAAATCCGGAATCCATAAAGCTGGAAAGA 550897 Query 72065 GATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 72124 |||| | | | | || || || ||||| ||| ||| | ||| | | | Sbjct 550898 GATCACGAGCACGTTTTTCTTCAGCACCAGTATTTTTTCGTGCATCCAAAAACTCAAAGA 550957 Query 72125 TATCAGAATGCCACGGTTCCAAGTA 72149 |||| | |||||| |||||||| || Sbjct 550958 TATCCGCATGCCATGGTTCCAAATA 550982 Score = 140 bits (154), Expect = 4e-28 Identities = 325/484 (67%), Gaps = 7/484 (1%) Strand=Plus/Minus Query 71590 GGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCC 71649 ||||| | |||| ||| |||||||| || | ||| | || || || | |||| Sbjct 384413 GGATAGAAGTTAACATCAATAATTTTGTTCAAATTGCGTACGATAACACTTGTTACATGA 384354 Query 71650 TTTAGTTTGAGAAAATCAAATCTCCCATCTATTACAAACA---CGTTCAAG-GCAACAGA 71705 || || |||||||||| | | |||| || |||| || | ||| |||| || Sbjct 384353 ACAAGCTTATCAAAATCAAATGTTCGATCTGG-ACGAACAAATCGATTAAGTGCAATTGA 384295 Query 71706 TGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAG 71765 ||||| ||||||||| || || ||||| | | | ||||| |||||||| || || | Sbjct 384294 TGCCAAATTACAAACAGCAACTTCATTTGGTGCTGTATATTCAATAATTTCCGTACATAA 384235 Query 71766 ATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 71825 ||| ||| | || || || | || |||||||||||| || |||||| ||| || Sbjct 384234 ATTTGAACAATGAATTGTACCAAGATGTTGTTGATTACTTTTAGCATTACACTGATCTTT 384175 Query 71826 ATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGAC 71885 ||| || || || || |||||||||||||| || | | | ||| || ||| | | Sbjct 384174 ATATAGCATGAATGGTGTACCAGTTTCAATTTGTGCATTGACAATAGCAAACCAAAGATC 384115 Query 71886 TCGAGCCTTTATTATA-TTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 | | || || ||| || || | | | || || ||| |||| ||||||||| || Sbjct 384114 TTGTGCTTTAATTGTACGTCGTCCAAGACCTTCCT-GTTCATATTTTGTATATAAATCTT 384056 Query 71945 CGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACC 72004 |||| || | ||||||| |||| | ||| ||||| || |||||||| |||| || Sbjct 384055 CGAATTCTTTTCCCCAAACATTTTGTAAATGTTTACATTGATGTGGACACATTAATGTCC 383996 Query 72005 ACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 72064 | | | | | | | | || || |||||| | ||| |||||||| | ||| ||| | Sbjct 383995 ATTTTTCGTTAGCTTCAACACGACGCATAAATAAATCCGGAATCCATAAGGCTGGAAAGA 383936 Query 72065 GATC 72068 |||| Sbjct 383935 GATC 383932 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 |||||||||||| ||||| | ||| | || ||| | ||| |||||||| ||||| | Sbjct 384989 TACTTGAAATTCACCAGAAAGTACACGTCGTACGTATAAATTGCTGGTATATGGTTCAAT 384930 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| || || || || | |||||| || || || || || ||||| ||||| | ||||| Sbjct 384929 TGATTCGTTGTTACCAAGAATTTGTGCTGTAGAAGCTGTTGGCATTGGTGCTAACAATAA 384870 Query 71262 ACTATTTCTAAGACCAT 71278 |||||| | | ||||| Sbjct 384869 ACTATTACGAGTACCAT 384853 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 |||||||||||| ||||| | ||| | || ||| | ||| |||||||| ||||| | Sbjct 549844 TACTTGAAATTCACCAGAAAGTACACGTCGTACGTATAAATTGCTGGTATATGGTTCAAT 549903 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| || || || || | |||||| || || || || || ||||| ||||| | ||||| Sbjct 549904 TGATTCGTTGTTACCAAGAATTTGTGCTGTAGAAGCTGTTGGCATTGGTGCTAACAATAA 549963 Query 71262 ACTATTTCTAAGACCAT 71278 |||||| | | ||||| Sbjct 549964 ACTATTACGAGTACCAT 549980 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || ||||| || | || || | || || |||||||||||||| || | || |||||| Sbjct 383354 CCTGCATTGAAAAGTGTTGGTGTTGCATGTGTAAACCATTTTTCTGATAATAAATTGTAT 383295 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || |||||||| || ||||| || ||| || || || || |||||||| | |||| Sbjct 383294 GTTTCAATAGCACTATCAATATCTGATCCATGAATACCAACAGCAACACGCATAAGCATA 383235 Query 72541 TGCTGAGGTCTTTCAACGAT 72560 || || |||| |||||| || Sbjct 383234 TGTTGTGGTCGTTCAACAAT 383215 Score = 86.0 bits (94), Expect = 8e-12 Identities = 138/198 (70%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 71359 CCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCA 71418 || || ||| || ||| |||| |||||| || ||||| || | ||| ||| |||| Sbjct 384706 CCTTTGCTAACGGGTGAACCTGGATATGTTTCATATGGACCATTGATTTTAGCTGATTCA 384647 Query 71419 CAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGT 71478 ||||| || | |||||| |||||||||| ||||||||||| | ||| || | ||| Sbjct 384646 CAACTTGCTTTTAATGCAGCATAATAAATTGTTTCGAAAATATCACGATTAAGTTGTTGA 384587 Query 71479 GCTTCCGGGCTATCAAATGGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 71534 ||||| || || |||||| | || || ||||| | || || | ||||| Sbjct 384586 GCTTCTTCACTTTCGAATGGAAATCGCATCAAACAGAAT----GTATCAGCAAGACCTTG 384531 Query 71535 AACGCCAATACCGATAGG 71552 ||| |||||||| || || Sbjct 384530 AACACCAATACCAATTGG 384513 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || ||||| || | || || | || || |||||||||||||| || | || |||||| Sbjct 551482 CCTGCATTGAAAAGTGTTGGTGTTGCATGTGTAAACCATTTTTCTGATAATAAATTGTAT 551541 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || |||||||| || ||||| || ||| || || || || |||||||| | |||| Sbjct 551542 GTTTCAATAGCACTATCAATATCTGATCCATGAATACCAACAGCAACACGCATAAGCATA 551601 Query 72541 TGCTGAGGTCTTTCAACGAT 72560 || || |||| |||||| || Sbjct 551602 TGTTGTGGTCGTTCAACAAT 551621 >seq163 Length=332407 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/106 (80%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 42325 ATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGC 42384 |||||||| || ||||| ||||| | |||||||||||| |||||||| |||||||| || Sbjct 173322 ATCTTTAATGTACGTATCAATCAATAAACTATACATTTCCGAATGAATATTTTCAATTGC 173263 Query 42385 CATCTGAAATCCGTAGAAACATCTGGCCTC-GGTAACCTGTACTTC 42429 || ||||| || |||||||| | || || ||||| || ||||| Sbjct 173262 TATTTGAAAACCATAGAAACAACGTGCTTCAGGTAA-TTGAACTTC 173218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670835786356920