Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Adineta_20vaga_20[genbank_20GCA_5F000513175.1_202013-11-26] 36,167 sequences; 217,933,776 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq1298 488 2e-133 seq3084 116 1e-21 >seq1298 Length=11968 Score = 488 bits (540), Expect = 2e-133 Identities = 338/400 (85%), Gaps = 39/400 (10%) Strand=Plus/Plus Query 11845 AGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTG 11904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11 AGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTG 70 Query 11905 GAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGT 11964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 71 GAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGT 130 Query 11965 CAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGG 12024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131 CAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGG 190 Query 12025 CGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAGG 12084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 191 CGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAA 250 Query 12085 TTCCCCTAAAATGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA 12144 |||||||||| ||||| ||| Sbjct 251 ATCCCCTAAAACGAGGG---------------------------------------ATAA 271 Query 12145 AACATCCCTCAAATTAGGGGATTGCTNNNNNNNNNNNNNNNNGGACACAAAAGACACTAT 12204 ||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 272 AACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTAT 331 Query 12205 TACaaaagaaaaaagaaaaGATTATTCGTCCGAGAATTCT 12244 |||||||||||||||||||||||||||||| ||||||||| Sbjct 332 TACAAAAGAAAAAAGAAAAGATTATTCGTCAGAGAATTCT 371 Score = 488 bits (540), Expect = 2e-133 Identities = 338/400 (85%), Gaps = 39/400 (10%) Strand=Plus/Plus Query 11845 AGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTG 11904 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10837 AGATCTGACCAAGCGACAGTTTAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTG 10896 Query 11905 GAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGT 11964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10897 GAATAAACCAATGGACAGAATCACCGATTCTCAACTTAGCGAGATTACAAAGTTACCTGT 10956 Query 11965 CAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGG 12024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10957 CAAACGGTGCAATGAAGCCAAGTTAGAACTCGTCAGAATGAATATTATCAAGCAGCAAGG 11016 Query 12025 CGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAGG 12084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11017 CGGCATGTTTGGACCAAATAAAAACATCTCAGAATGGTGCATCCCTCAAAACGAGGGAAA 11076 Query 12085 TTCCCCTAAAATGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA 12144 |||||||||| ||||| ||| Sbjct 11077 ATCCCCTAAAACGAGGG---------------------------------------ATAA 11097 Query 12145 AACATCCCTCAAATTAGGGGATTGCTNNNNNNNNNNNNNNNNGGACACAAAAGACACTAT 12204 ||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 11098 AACATCCCTCAAATTGGGGGATTGCTATCCCTCAAAACAGGGGGACACAAAAGACACTAT 11157 Query 12205 TACaaaagaaaaaagaaaaGATTATTCGTCCGAGAATTCT 12244 |||||||||||||||||||||||||||||| ||||||||| Sbjct 11158 TACAAAAGAAAAAAGAAAAGATTATTCGTCAGAGAATTCT 11197 Score = 158 bits (174), Expect = 4e-34 Identities = 107/120 (89%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 8592 GAGATCTGGATTGCGTTGTTTAGCAAGTTGTATCTATTTATTTTTCAACAAATACAATTG 8651 |||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 8444 GAGATCTGAATTGCTATGTTTAGTGAGTTGTATCTATTTATTTTTCAATAAATACAATTG 8503 Query 8652 GTTATGTGTTTTTAGGTGTGGGGATCGTGAGGCAAAGAAAACCCGGCGCTGAGGCCGGGT 8711 |||||||||||| | || |||||||||||||||||||||||||||||||||||||| Sbjct 8504 GTTATGTGTTTT----GGGGGCGATCGTGAGGCAAAGAAAACCCGGCGCTGAGGCCGGGT 8559 >seq3084 Length=1747 Score = 116 bits (128), Expect = 1e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 13364 GGCAATTATTCATTACCTGGGGACGCATAATAGCTTCTGTGCGCCGGACGTTGCCGCGCT 13423 |||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||| | Sbjct 392 GGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGT 451 Query 13424 AACAGGCGCAACAGTAA 13440 |||||||||||| |||| Sbjct 452 AACAGGCGCAACCGTAA 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185174836361368