Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AC_000007.1 Length=35937 Score E Sequences producing significant alignments: (Bits) Value seq11130 271 2e-68 >seq11130 Length=238846 Score = 271 bits (300), Expect = 2e-68 Identities = 290/345 (84%), Gaps = 41/345 (12%) Strand=Plus/Plus Query 6542 CGTCCGGGGGGTCTGCGT-CCACGGTAAAG-ACCCCGGGC-AGCAGGCGCGCGT--CGAA 6596 |||||||||| || |||| ||||||||||| ||||||| | |||||||||||| |||| Sbjct 1173 CGTCCGGGGG-TCAGCGTACCACGGTAAAGGACCCCGGACGAGCAGGCGCGCGGTACGAA 1231 Query 6597 -GTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGCGGGCGGCAA--G 6653 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1232 AGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGC-GGCGGCAAAGG 1290 Query 6654 CGCGCGC-TCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCGCGGAGG 6712 ||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1291 CGCGCGCTTCGAATGGGTTGAGT-GGGGACCCCATGGCATGGGGTGG--GAGCGCGGAGG 1347 Query 6713 CGTACATGCCGCAAATGTCGTAAACGTAGAGGGGCT--CTCTGAGT-ATTCC--AAGATA 6767 ||||||| |||||||||| |||| ||||||||| || |||| ||||| ||| | Sbjct 1348 CGTACAT--CGCAAATGTC-TAAA--GAGAGGGGCTTCCTTGGAGTAATTCCAAAAGTAA 1402 Query 6768 TGTAGGGTAGC-AT-CTTCCACCGCGGATG-CTGG-CG-CGCACGTAAT-CGTATAGTTC 6821 ||||||| | | || | ||||| ||||| |||| || |||||||||| ||||||||| Sbjct 1403 TGTAGGGAACCTATCCGTCCAC--GGGATGCCTGGACGACGCACGTAATACGTATAGTT- 1459 Query 6822 GTGCGAGGGAGCGAGGAGGT-CGGGACCG---AGGTT-GCTACGG 6861 ||| || |||| |||||||| |||||||| ||||| | ||||| Sbjct 1460 GTG-GA-GGAG-GAGGAGGTACGGGACCGGTAAGGTTAGGTACGG 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114854845176772