Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= AC_000017.1 Length=36001 Score E Sequences producing significant alignments: (Bits) Value seq11130 253 5e-63 >seq11130 Length=238846 Score = 253 bits (280), Expect = 5e-63 Identities = 285/345 (83%), Gaps = 41/345 (12%) Strand=Plus/Plus Query 6563 CGTCCGGGGGGTCCGCGT-CCACGGTAAAG-ATCCCGGGCAA-CAGGCGCGCGT--CGAA 6617 |||||||||| || |||| ||||||||||| | ||||| | | |||||||||| |||| Sbjct 1173 CGTCCGGGGG-TCAGCGTACCACGGTAAAGGACCCCGGACGAGCAGGCGCGCGGTACGAA 1231 Query 6618 -GTAGTCTATCTTGCATCCTTGCAAGTCTAACGCCTGCTGCCATGCGCGGGCGGCAA--G 6674 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| | Sbjct 1232 AGTAGTCTATCTTGCATCCTTGCAAGTCTAGCGCCTGCTGCCATGCGC-GGCGGCAAAGG 1290 Query 6675 CGCGCGC-TCGTATGGGTTGAGTGGGGGACCCCATGGCATGGGGTGGGTGAGCGCGGAGG 6733 ||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 1291 CGCGCGCTTCGAATGGGTTGAGT-GGGGACCCCATGGCATGGGGTGG--GAGCGCGGAGG 1347 Query 6734 CGTACATGCCGCAGATGTCGTAAACGTAGAGGGGCTCCCT--GAGT-ATTCC--AAGATA 6788 ||||||| |||| ||||| |||| ||||||||| ||| |||| ||||| ||| | Sbjct 1348 CGTACAT--CGCAAATGTC-TAAA--GAGAGGGGCTTCCTTGGAGTAATTCCAAAAGTAA 1402 Query 6789 TGTAGGGTAGC-AT-CTTCCACCGCGGATG-CTGG-CG-CGCACGTAAT-CGTATAGTTC 6842 ||||||| | | || | ||||| ||||| |||| || |||||||||| ||||||||| Sbjct 1403 TGTAGGGAACCTATCCGTCCAC--GGGATGCCTGGACGACGCACGTAATACGTATAGTT- 1459 Query 6843 GTGCGAGGGGGCGAGGA-GTTCGGGACCG---AGGTT-GCTACGG 6882 ||| |||| | ||||| || |||||||| ||||| | ||||| Sbjct 1460 GTG-GAGGAG--GAGGAGGTACGGGACCGGTAAGGTTAGGTACGG 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 115059606036164