Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1222 163 4e-36 seq16078 132 8e-27 seq16085 129 9e-26 seq14567 102 1e-17 seq16092 84.2 3e-12 >seq1222 Length=899366 Score = 163 bits (180), Expect = 4e-36 Identities = 183/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 |||||| || |||||||| || || || |||||||| || |||||||| ||||||||||| Sbjct 148545 TCTTCGCGACAACATCCAGGGTATTACAAAGCCAGCCATACGTCGTCTTGCTCGTCGTGG 148486 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 ||| || || ||| |||| || ||| |||||||||| | ||| | |||||| || | || Sbjct 148485 TGGGGTAAAACGTATCTCAGGTTTGATCTATGAAGAAACTCGAGGTGTTTTAAAAGTTTT 148426 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 | | ||| ||| || | ||||| | || |||||||| || || | |||||||| Sbjct 148425 CTTGGAGAACGTGATTCGAGATGCAGTTACTTACACCGAGCATGCCAAGAGAAAGACTGT 148366 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||| | |||||||| ||||| | |||||||| | | || || || || Sbjct 148365 CACTGCTATGGATGTTGTCTATGCCCTGAAAAGGCAAGGCCGCACTCTGTACGGCTTCGG 148306 Query 16693 AAGTT 16697 | ||| Sbjct 148305 AGGTT 148301 >seq16078 Length=592481 Score = 132 bits (146), Expect = 8e-27 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 16453 TCTTCGAG-ATAACATCCAAGGAATCACCAAGCCAG--CTATCCGTCGTCTGGCTCGTCG 16509 |||||| | | |||||||| || || || |||||| | || |||||||| |||||||| Sbjct 501048 TCTTCGGGGACAACATCCAGGGTATTACAAAGCCAAGCCCATACGTCGTCTTGCTCGTCG 500989 Query 16510 TGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGAT 16569 |||||| || || ||| |||| || ||| |||||||||| | ||| | ||||||||| | Sbjct 500988 TGGTGGGGTAAAACGTATCTCAGGTTTGATCTATGAAGAAACTCGAGGTGTTTTGAAAGT 500929 Query 16570 CTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGAC 16629 ||| | ||| ||| || | ||||| | || |||||||| || || | ||||| Sbjct 500928 TTTCTTGGAGAACGTGATTCGAGATGCAGTTACTTACACCGAGCATGCCAAGAGAAAGAC 500869 Query 16630 TGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 |||||| | |||||| | ||||| || ||||| |||||||| Sbjct 500868 TGTCACTGCTATGGATGTTGTCTA-GCCCTGAAA--GCAAGGCCG 500827 >seq16085 Length=61258 Score = 129 bits (142), Expect = 9e-26 Identities = 198/276 (72%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| |||||| || || ||||||||| ||||||| || || || Sbjct 25939 GCCAAGCGTCACAGGAAGAT-TCTTCGTGACAATATCCAAGGA-TCACCAAACCTGCAAT 25882 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||| || | || | ||||| |||||| |||| || || |||| || || | Sbjct 25881 CCGTCGTCCAGCGCCACGCGCAGGAGTTAAGCGTATCTCAGGTCTGATCTACGAGGAAAC 25822 Query 16552 TCGTGATGTTTTGAAGATCTTCCTC-AAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | || | ||| | |||| ||||||| ||||||| | ||| |||| Sbjct 25821 TCGAGGTGTCCTTAAAGTTTTCTTGGAAGAATGTTATCCGTGATGCTGTGACCTACACCG 25762 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCG-TCTATGCATTGAAACGTCAA 16669 ||||||| || | ||||||||||| ||||||| | | | ||||| |||| | ||| Sbjct 25761 AGCACGCCAAGAGAAAGACTGTCACTGCCATGGACGTTGTTTTATGCCCTGAAGAGACAA 25702 Query 16670 GGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 ||||| | | || || || ||| ||| | | ||| Sbjct 25701 GGCCGAACTCTGTACGGATTCGGAGGTTGAGCATCT 25666 >seq14567 Length=109074 Score = 102 bits (112), Expect = 1e-17 Identities = 91/113 (81%), Gaps = 1/113 (1%) Strand=Plus/Plus Query 16455 TTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTG 16514 |||| || |||||||| || || || |||||||| || |||||||| |||||||||||| Sbjct 22587 TTCGCGACAACATCCAGGGTATTACAAAGCCAGCCATACGTCGTCTTACTCGTCGTGGTG 22646 Query 16515 GAGTCAAGCGTGTCTCTGG-ATTGGTCTATGAAGAGATTCGTGATGTTTTGAA 16566 | || |||||| |||| || ||| |||||||||| | ||| | |||||| || Sbjct 22647 GGGTAAAGCGTATCTCAGGTTTTGATCTATGAAGAAACTCGAGGTGTTTTAAA 22699 >seq16092 Length=58194 Score = 84.2 bits (92), Expect = 3e-12 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 |||||||||| | ||| | |||||| || | ||| | ||| ||| || | ||||| Sbjct 38189 TCTATGAAGAAACTCGAGGTGTTTTAAAAGTTTTCTTGGAGAACGTGATTCGAGATGCAG 38248 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 | || |||||||| || || | ||||||||||| | |||||| | |||||||| Sbjct 38249 TTACTTACACCGAGCATGCCAAGAGAAAGACTGTCACTGCTATGGATGTTGTCTATGCCC 38308 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||| | |||||||| | | || ||||| ||| ||| Sbjct 38309 TGAAAAGGCAAGGCCGCACTCTGTACGGTTTCGGAGGTT 38347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060485143142