Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq15270 104 2e-17 seq6644 98.7 7e-16 >seq15270 Length=219883 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 21786 CTCTCTTTTCAAAGTTCTTTTCATTTTTCCCTCACGGTACTTGTTCACTATCGGTCTCGT 21727 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 21726 GCCAATATTTAGCTTTA 21710 >seq6644 Length=323484 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 149244 TCTCTTTTCAAAGTTCTTTTCAT-TTTCCCTCACGGTACTTGTTCACTATCGGTCTCGTG 149302 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 149303 CCAATATTTAGCTTTA 149318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334881501572114