Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1734 114 1e-19 seq11140 113 3e-19 >seq1734 Length=23643 Score = 114 bits (126), Expect = 1e-19 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || |||||||| |||| |||||| || |||||||| || || || | || ||| Sbjct 2172 TTCTTGTCCAGACCATAAGCAATAGCAGCTGCCGTTGGTTCGTTGATGATACGCATGACA 2231 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || ||||||||||| | || ||||| || ||||| ||||| || ||||||||||| || Sbjct 2232 TTGAGACCAGCAATGGTGCCAGCATCCTTTGTGGCCTGTCTCTGGGAATCGTTAAAGTAC 2291 Query 518285 GCAGGAACAGT 518295 |||||||| || Sbjct 2292 GCAGGAACTGT 2302 >seq11140 Length=102341 Score = 113 bits (124), Expect = 3e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 1047732 TGATTTGAAACTGTTTTTTAATGGTAGACCCGGAATTATTGCTTGGAATTTGATTAATTT 1047791 |||||| || | || ||||| |||||| || ||| ||| |||| ||| ||||| || Sbjct 49822 TGATTTCAAGTTATTCTTTAACACTAGACCTGGCATTCTTGGATGGACTTTAATTAACTT 49881 Query 1047792 GTCGTGTGCAATGAAACAATACGAAAATTTTGGATACGTTTCTAATTCAATGATTCTTGT 1047851 || ||||| |||| || || | || |||| || ||| | ||||| |||||| | || Sbjct 49882 ATCTTGTGCTGTGAAGCAGTATCACAACATTGGCTATGTTACAAATTCTATGATTTTAGT 49941 Query 1047852 TATTATTTTACAATTGATATATATTGTTGAttttttttATAATGAAAATTGGTATGTTCA 1047911 | | || | ||| | ||| | | || || ||||| || ||| | ||||| | | Sbjct 49942 CAATCTTCTCCAAGGACTCTATGTGATAGACTTGTTTTACAAAGAAGACTGGTACTTACG 50001 Query 1047912 CACTGTAGATATTGCTCATGATCATTTTGGAT 1047943 |||||||||||||||||||| |||||||||| Sbjct 50002 GACTGTAGATATTGCTCATGACCATTTTGGAT 50033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780023762706364