Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alatina_20alata_20[genbank_20GCA_5F000260875.1_202012-05-01] 16,094 sequences; 1,544,153,083 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1734 96.9 2e-14 seq11140 89.7 3e-12 >seq1734 Length=23643 Score = 96.9 bits (106), Expect = 2e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || ||||| || || ||||| ||||| || | || || || || ||||| || | ||| Sbjct 2302 ACAGTTCCTGCGTACTTTAACGATTCCCAGAGACAGGCCACAAAGGATGCTGGCACCATT 2243 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || ||||| ||||| | ||||| || || |||||||| ||||| || ||||||||||| Sbjct 2242 GCTGGTCTCAATGTCATGCGTATCATCAACGAACCAACGGCAGCTGCTATTGCTTATGGT 2183 Query 474866 CTTGATAAGAA 474876 || || ||||| Sbjct 2182 CTGGACAAGAA 2172 >seq11140 Length=102341 Score = 89.7 bits (98), Expect = 3e-12 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 80267 CCAAAATGATCGTGTGCGATATCAACTGTATGAACATACCAATTCTCATTATAAAAGAAA 80326 |||||||| || || || ||||| || || | | ||||| | || || ||||| || Sbjct 50031 CCAAAATGGTCATGAGCAATATCTACAGTCCGTAAGTACCAGTCTTCTTTGTAAAACAAG 49972 Query 80327 TCCAAAATATAAA-TCATTTGTAAAAAGATA-ACAAGTATCATAGAATTTGATATATATC 80384 || | | ||| | || || | | ||||| || | ||||||||||||| | ||| | Sbjct 49971 TCTATCACATAGAGTCCTTGG--AGAAGATTGACTAAAATCATAGAATTTGTAACATAGC 49914 Query 80385 CAAAATTATCATATTGTTTAGCAGCACAAGATAAATTTATCAAATTCCAAGCTATAATAC 80444 ||| || | ||| || || ||||||||||||| || || ||| |||| | | ||| | Sbjct 49913 CAATGTTGTGATACTGCTTCACAGCACAAGATAAGTTAATTAAAGTCCATCCAAGAATGC 49854 Query 80445 CCGGTCTTCCATTAAAAAATAATTTTAAATCA 80476 | ||||| ||||| ||||| || |||||| Sbjct 49853 CAGGTCTAGTGTTAAAGAATAACTTGAAATCA 49822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267488850251912